LOCUS AK058518 1425 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-016-H04, full insert
sequence.
ACCESSION AK058518
VERSION AK058518.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1425)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1425
/clone="001-016-H04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1425
/db_xref="Osa1:LOC_Os01g50370"
/db_xref="RAP-DB:Os01g0699100"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) mitogen-activated
protein kinase kinase kinase 1, putative, expressed"
/note="mapping to R01-TIGRv4S1-001242F (Chr.1: short
arm=29248344, long arm=29249768, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 283 a 397 c 501 g 244 t
ORIGIN
1 aactcagacc gaacaaaagg atcaccagct cagagctcac caccaccacc accaacaaca
61 acaacaacgc attgcaaagc aaggagaaat ccgaagtcca acaacaccca caagaaaaga
121 gaagaagcgg ggaatggcga tcgccgtgag cgggcgctgg acgcggctgc ggacgctggg
181 ccgtggcgcg tcgggcgccg tggtgtcgct ggcggaggac ggcgcgtcgg gggagctgtt
241 cgcggtcaag accgcggccg cggcggaggc ggcgatgctg aggagggagc gggggatgat
301 gtctgggctg tcctcgccac acgtcgtgcc ctgcatcggc ggcggcgatg gccccgacgg
361 gtcatacaat ctcttccttg agttcgcccc cgggggatcg ctcgccaacg aggttgccag
421 ggatggggga cgcctcgagg agcgcgcgat cagggtgtac gcggcggatg tcctgcgcgg
481 gctgacgtac ctccacggga tgtcgctcgt acacggggat gtcaaggcgg acaacatagt
541 gatcggtgtc gacgggctcg ccaagctcgc cgacttcggg tgtgcgaaaa ccatggattc
601 ggagcggccg gtcagcggca cacctgcgtt catggcgccg gaggttgccc gcggggagga
661 gcaggggcca gcggcagacg tttgggctct tggctgcacg gtcatcgaga tggccaccgg
721 gcgcgcgccg tggagcgaca tggacgacgt cctcgccgcc gtccaccgga ttgggtacac
781 ggacgccgtg ccggaggtgc cggtttggct gtccgcagag gcgaaggact tcttggccat
841 gtgttttgcg agaaacgccg gcgaccggag caccgcggca cagctcttgg agcatccgtt
901 cgtggcattc gcctgccacg aagtcaaggc cgcgcagccg aagcccaggt gggtctctcc
961 gaagagcaca ctggacgccg cattctggga gtcggagacc gacgacgagg aggaggtcga
1021 cgagataaca gagagcctct gcgataggat caagtcactg gcgtgccctg tttcggcctt
1081 gccggattgg gactccgacg aaggctggat cgatctgctc ggcgagcagt gcgaggcttg
1141 cgattcggaa gcggccaggg aatcgattga tgtggcgcgt agcgcgccaa gcaaagtgtc
1201 cagcgcggcg acggtgccag ctgctgaagt ggtgcttgtc ggcggcggct gctgtccaag
1261 caatgaagcg gacgctttcg atcagtcaat tggtggcgat atccaagccg ctgatcgttc
1321 aatcgagcgt cggaataaag tctgcgctgg ttcagacaat gatgtacttc catttcgatt
1381 agtatgtaac ggaatttgtg caatggaatt ctttcagttt ttcac
//