LOCUS       AK042288                1642 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A630078M16 product:lymphocyte antigen 9,
            full insert sequence.
ACCESSION   AK042288
VERSION     AK042288.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A630078M16
FEATURES             Location/Qualifiers
     source          1..1642
                     /clone="A630078M16"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A630078M16"
                     /db_xref="MGI:2407320"
                     /db_xref="taxon:10090"
                     /dev_stage="3 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     CDS             27..>1642
                     /codon_start=1
                     /note="lymphocyte antigen 9 (MGD|MGI:96885 GB|NM_008534,
                     evidence: BLASTN, 99%, match=1565)"
                     /note="putative"
                     /protein_id="BAC31215.2"
                     /transl_table=1
                     /translation="MADLKRYWCDWALGPLSENPRMSQQQIFSPILWIPLLFLLMGLG
                     ASGKETPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFYKKDITILDKG
                     YNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNVILTTNKEFTLHIYEKLQKPQII
                     VESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDL
                     PYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRAT
                     KNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPY
                     HAYVCSEASRDPSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVT
                     YTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPER
                     NKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSV
                     LSQRYEKLDMSAKTTRHQPTPTSDTSSESSP"
BASE COUNT          459 a          438 c          383 g          362 t
ORIGIN      
        1 aatttgaaat ctggaagtac accatcatgg cggatctaaa gagatattgg tgtgactggg
       61 ctctaggtcc actctctgaa aatccaagaa tgagtcagca gcagatattt tctcccattc
      121 tttggattcc tctcctcttc ctactcatgg ggctcggagc ctctggaaag gaaacacctc
      181 caacagtgat atcagggatg ctagggggtt ctgtgacttt ctccctaaac atctcaaagg
      241 atgcagagat tgagcatatc atctggaatt gtcccccaaa ggctcttgct ttagtattct
      301 acaaaaaaga tataactatt ctggacaaag gatataatgg cagactcaaa gtcagcgaag
      361 atggctactc cttgtacatg agcaacctaa ccaaaagtga ttcaggatcc taccatgctc
      421 agataaacca aaagaatgtt atcctcacca caaataaaga gttcacactg cacatctatg
      481 agaagctcca gaagcctcag atcatcgtgg aatctgtgac cccatccgat actgattcct
      541 gcaccttcac cctaatctgc actgtaaagg ggacaaagga cagtgtccag tacagctgga
      601 cccgagagga cacccattta aatacatacg atggaagcca caccctcagg gtttcccaga
      661 gtgtctgtga ccccgaccta ccctatacct gcaaagcctg gaatccagtc agccaaaaca
      721 gctcccaacc tgtccgcatc tggcaattct gcacaggagc ctccagaaga aaaacagcag
      781 cggggaagac tgtggtagga atcctgggag agccagtgac cctgcccttg gaatttcggg
      841 ccactcgggc cacaaagaat gttgtctggg tgtttaacac gtcggttatc agccaagaac
      901 ggagaggagc agcaacagcg gattctcgcc gtaagcccaa aggttctgaa gaacggaggg
      961 tgaggacctc tgaccaggac caatccctga agatcagcca gctgaagatg gaggacgcgg
     1021 gcccctacca tgcctatgtg tgctcagagg cctcccgaga ccccagtgtg agacatttca
     1081 ccttgcttgt ctacaagaga ctggagaagc ccagtgtcac caagagtcct gtgcacatga
     1141 tgaacggaat ctgcgaggtt gtcctgacct gttcagtgga cggtggtgga aacaatgtga
     1201 catacacatg gatgcctcta caaaacaaag ctgtcatgtc ccaagggaag tcgcacctca
     1261 acgtctcctg ggaaagtggt gaacacctgc ccaacttcac atgcacagcc cataaccctg
     1321 tcagcaacag ctccagccag ttttcttctg ggaccatctg ttcaggccct gagagaaaca
     1381 agaggttttg gctcctgctc ctcctggttt tgctcttgtt gatgctcatt ggcggttact
     1441 tcattttgag gaaaaagaag cagtgttcgt ctttggccac caggtacaga caagcggagg
     1501 tcccagctga aataccagaa accccaactg gccatggaca attttctgtg ctctcccaac
     1561 ggtatgagaa actagacatg tctgctaaga ccaccaggca tcagcctaca cccacctcag
     1621 ataccagctc tgagagcagc cc
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