LOCUS AK042288 1642 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630078M16 product:lymphocyte antigen 9, full insert sequence. ACCESSION AK042288 VERSION AK042288.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1642) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A630078M16 FEATURES Location/Qualifiers source 1..1642 /clone="A630078M16" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A630078M16" /db_xref="MGI:2407320" /db_xref="taxon:10090" /dev_stage="3 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" CDS 27..>1642 /codon_start=1 /note="lymphocyte antigen 9 (MGD|MGI:96885 GB|NM_008534, evidence: BLASTN, 99%, match=1565)" /note="putative" /protein_id="BAC31215.2" /transl_table=1 /translation="MADLKRYWCDWALGPLSENPRMSQQQIFSPILWIPLLFLLMGLG ASGKETPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFYKKDITILDKG YNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNVILTTNKEFTLHIYEKLQKPQII VESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDL PYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRAT KNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPY HAYVCSEASRDPSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVT YTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPER NKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSV LSQRYEKLDMSAKTTRHQPTPTSDTSSESSP" BASE COUNT 459 a 438 c 383 g 362 t ORIGIN 1 aatttgaaat ctggaagtac accatcatgg cggatctaaa gagatattgg tgtgactggg 61 ctctaggtcc actctctgaa aatccaagaa tgagtcagca gcagatattt tctcccattc 121 tttggattcc tctcctcttc ctactcatgg ggctcggagc ctctggaaag gaaacacctc 181 caacagtgat atcagggatg ctagggggtt ctgtgacttt ctccctaaac atctcaaagg 241 atgcagagat tgagcatatc atctggaatt gtcccccaaa ggctcttgct ttagtattct 301 acaaaaaaga tataactatt ctggacaaag gatataatgg cagactcaaa gtcagcgaag 361 atggctactc cttgtacatg agcaacctaa ccaaaagtga ttcaggatcc taccatgctc 421 agataaacca aaagaatgtt atcctcacca caaataaaga gttcacactg cacatctatg 481 agaagctcca gaagcctcag atcatcgtgg aatctgtgac cccatccgat actgattcct 541 gcaccttcac cctaatctgc actgtaaagg ggacaaagga cagtgtccag tacagctgga 601 cccgagagga cacccattta aatacatacg atggaagcca caccctcagg gtttcccaga 661 gtgtctgtga ccccgaccta ccctatacct gcaaagcctg gaatccagtc agccaaaaca 721 gctcccaacc tgtccgcatc tggcaattct gcacaggagc ctccagaaga aaaacagcag 781 cggggaagac tgtggtagga atcctgggag agccagtgac cctgcccttg gaatttcggg 841 ccactcgggc cacaaagaat gttgtctggg tgtttaacac gtcggttatc agccaagaac 901 ggagaggagc agcaacagcg gattctcgcc gtaagcccaa aggttctgaa gaacggaggg 961 tgaggacctc tgaccaggac caatccctga agatcagcca gctgaagatg gaggacgcgg 1021 gcccctacca tgcctatgtg tgctcagagg cctcccgaga ccccagtgtg agacatttca 1081 ccttgcttgt ctacaagaga ctggagaagc ccagtgtcac caagagtcct gtgcacatga 1141 tgaacggaat ctgcgaggtt gtcctgacct gttcagtgga cggtggtgga aacaatgtga 1201 catacacatg gatgcctcta caaaacaaag ctgtcatgtc ccaagggaag tcgcacctca 1261 acgtctcctg ggaaagtggt gaacacctgc ccaacttcac atgcacagcc cataaccctg 1321 tcagcaacag ctccagccag ttttcttctg ggaccatctg ttcaggccct gagagaaaca 1381 agaggttttg gctcctgctc ctcctggttt tgctcttgtt gatgctcatt ggcggttact 1441 tcattttgag gaaaaagaag cagtgttcgt ctttggccac caggtacaga caagcggagg 1501 tcccagctga aataccagaa accccaactg gccatggaca attttctgtg ctctcccaac 1561 ggtatgagaa actagacatg tctgctaaga ccaccaggca tcagcctaca cccacctcag 1621 ataccagctc tgagagcagc cc //