LOCUS AK042172 1328 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630066F16 product:CD3 antigen, delta
polypeptide, full insert sequence.
ACCESSION AK042172
VERSION AK042172.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1328)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630066F16
FEATURES Location/Qualifiers
source 1..1328
/clone="A630066F16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630066F16"
/db_xref="MGI:3543537"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 103..624
/codon_start=1
/note="CD3 antigen, delta polypeptide (MGD|MGI:88331
GB|X02339, evidence: BLASTN, 99%, match=569)"
/note="putative"
/protein_id="BAE20624.1"
/transl_table=1
/translation="MEHSGILASLILIAVLPQGSPFKIQVTEYEDKVFVTCNTSVMHL
DGTVEGWFAKNKTLNLGKGVLDPRGIYLCNGTEQLAKVVSSVQVHYRMCQNCVELDSG
TMAGVIFIDLIATLLLALGVYCFAGHETGRPSGAAEVQALLKNEQLYQPLRDREDTQY
SRLEGNWPRNKKS"
regulatory 1307..1312
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1328
/note="putative"
BASE COUNT 330 a 308 c 362 g 328 t
ORIGIN
1 gttttttctg aatacccatg agtctgttgg cggaggatag tgctaaccct ggctgatcat
61 cctgtggctt gcctctattt gttgcatgat tccctctgga agatggaaca cagcgggatt
121 ctggctagtc tgatactgat tgctgttctc ccccaaggga gccccttcaa gatacaagtg
181 accgaatatg aggacaaagt atttgtgacc tgcaatacca gcgtcatgca tctagatgga
241 acggtggaag gatggtttgc aaagaataaa acactcaact tgggcaaagg cgttctggac
301 ccacgaggga tatatctgtg taatgggaca gagcagctgg caaaggtggt gtcttctgtg
361 caagtccatt accgaatgtg ccagaactgt gtggagctag actcgggcac catggctggt
421 gtcatcttca ttgacctcat cgcaactctg ctcctggctt tgggcgtcta ctgctttgca
481 ggacatgaga ccggaaggcc ttctggggct gctgaggttc aagcactgct gaagaatgag
541 cagctgtatc agcctcttcg agatcgtgaa gatacccagt acagccgtct tgaagggaac
601 tggccccgga acaagaaatc ttaagatgga ggtttctcaa agtgccatag caacggcgcc
661 ttcccctgtg atcaaccaat aaagacgttt ccttccgtcg gcaggcgcct gtgttttcca
721 aagcatggat tgagagttgt cttagcttgg ctgagttctg cccacccgtg gcccctcact
781 tctggcttcc tctcctcaga cccagacagg cagtacgagg gacagcttcc catcctggcc
841 ccttggcatt tctaaccctg tgggtttcct gtgggcaggg tcagcccagc cactctgctt
901 cattgcctgt tggttccagt ccctatcata acaacttccg ggattttgct gccttaccac
961 agcccaaagc aggctgtggt gtttagaagc tgagccacaa agaagtttcc atgacatcat
1021 gaatgggggt ggcagagaag aatattgggg ctcagagggt gtgtgtgtgt gtgtgtgtgt
1081 gtgtgtgagt gagagagaga gagagagaga gagagagaga gagagagaca gacagagaga
1141 cagagagaca gaaagacaga aagacagaaa gacagagaca gagctgtcaa gaattttctt
1201 ctcacttcgt gggttctggg gattgtacta aggtcatgag gcttgtatgg caagcaccct
1261 tacccactga gccatcttgc ctgccctcat cctcaaatta attaaaaata aagaacatga
1321 tgaattcc
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