LOCUS AK041421 2757 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630008D12 product:icos ligand, full
insert sequence.
ACCESSION AK041421
VERSION AK041421.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2757)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630008D12
FEATURES Location/Qualifiers
source 1..2757
/clone="A630008D12"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630008D12"
/db_xref="MGI:2406444"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 168..1136
/codon_start=1
/note="icos ligand (MGD|MGI:1354701 GB|NM_015790,
evidence: BLASTN, 99%, match=2656)"
/note="putative"
/protein_id="BAC30938.1"
/transl_table=1
/translation="MQLKCPCFVSLGTRQPVWKKLHVSSGFFSGLGLFLLLLSSLCAA
SAETEVGAMVGSNVVLSCIDPHRRHFNLSGLYVYWQIENPEVSVTYYLPYKSPGINVD
SSYKNRGHLSLDSMKQGNFSLYLKNVTPQDTQEFTCRVFMNTATELVKILEEVVRLRV
AANFSTPVISTSDSSNPGQERTYTCMSKNGYPEPNLYWINTTDNSLIDTALQNNTVYL
NKLGLYDVISTLRLPWTSRGDVLCCVENVALHQNITSISQAESFTGNNTKNPQETHNN
ELKVLVPVLAVLAAAAFVSFIIYRRTRPHRSYTGPKTVQLELTDHA"
regulatory 2736..2741
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2757
/note="putative"
BASE COUNT 663 a 748 c 685 g 661 t
ORIGIN
1 tggcagttac agcgggtctc ctgccgccaa agcctcaaga accccagatt tcagcgcccc
61 aagcctggaa gctccccagt tcttcgtggc ccccaacagc tccggaaccc cagccgctgc
121 aactctccgc gtacgaaatc cagcaccccg cagtctgcgc tcgcaccatg cagctaaagt
181 gtccctgttt tgtgtccttg ggaaccaggc agcctgtttg gaagaagctc catgtttcta
241 gcgggttctt ttctggtctt ggtctgttct tgctgctgtt gagcagcctc tgtgctgcct
301 ctgcagagac tgaagtcggt gcaatggtgg gcagcaatgt ggtgctcagc tgcattgacc
361 cccacagacg ccatttcaac ttgagtggtc tgtatgtcta ttggcaaatc gaaaacccag
421 aagtttcggt gacttactac ctgccttaca agtctccagg gatcaatgtg gacagttcct
481 acaagaacag gggccatctg tccctggact ccatgaagca gggtaacttc tctctgtacc
541 tgaagaatgt cacccctcag gatacccagg agttcacatg ccgggtattt atgaatacag
601 ccacagagtt agtcaagatc ttggaagagg tggtcaggct gcgtgtggca gcaaacttca
661 gtacacctgt catcagcacc tctgatagct ccaacccggg ccaggaacgt acctacacct
721 gcatgtccaa gaatggctac ccagagccca acctgtattg gatcaacaca acggacaata
781 gcctaataga cacggctctg cagaataaca ctgtctactt gaacaagttg ggcctgtatg
841 atgtaatcag cacattaagg ctcccttgga catctcgtgg ggatgttctg tgctgcgtag
901 agaatgtggc tctccaccag aacatcacta gcattagcca ggcagaaagt ttcactggaa
961 ataacacaaa gaacccacag gaaacccaca ataatgagtt aaaagtcctt gtccccgtcc
1021 ttgctgtact ggcggcagcg gcattcgttt ccttcatcat atacagacgc acgcgtcccc
1081 accgaagcta tacaggaccc aagactgtac agcttgaact tacagaccac gcctgacagg
1141 actctgccca ggatatggac agggtttctg tgagttgcca ccaggtggat gtcagacaca
1201 acttcagagt ggacccccac aggcctggtg acagaggaca acgagctgtc tgcttatggg
1261 ctgtgatgga ggccaggaat ccctggcttt acgaggcaca gagacttcat cccagaaacc
1321 ccgagggaga tctctccagt gggcagcagc aacatcatcg gaatatggag cctccggtga
1381 gctgtcggca cagagagcag cagcttgtga gaagatcctt ccttggcacg ttactactca
1441 ggcctaggag ctttataaaa gagcgtttga gccactctga aagccctaca gagtctactg
1501 gagactttcc ctgcaggacc ttcagttggg gaggaagcct gactttattt aggtctcagg
1561 ctacttgggc ctcttcgagg atatgtggga ttttgtctac tgcaaacctg tttctggctg
1621 acaatggttg ggctcagagg cactcagctt cacaacatca atgggacacg cctcatcctt
1681 gacttcctgt ggctacagaa gctttccgaa agccttgagc tctttcagac tgaacagctc
1741 tgcccagtct cagcagccca tgaagatctc aactccagct tcctgggtct ccgtgttgct
1801 ggccagaata gagctagctc ttttgtttca agatggttct gcaaagttgg ctgcttggaa
1861 acctagggat gtatgtacaa gctccaggct gatgcagtag ggggcacgga ctccccgatg
1921 gaacacagta tctgacccta ggtgagggca agctccttcc cacgcagagg actggaaatt
1981 ctggaccgtc aaggcctgtc tgctatgtgg ctggggctca gtgctgatgg atgtgtgaga
2041 tctcaggaat gaggagtgag aaccctgggc tcaggactag gaagacctgt ccattttttt
2101 tttttttaat gcccacatgg actttttatt cttcacaccg atgtattcaa tgagtgtaga
2161 gagaactact taagtccttc ccgagtacaa agcattacct acctgcagaa tagcaactgt
2221 tgttatgggt cttgagttgg cagctacagc aaacaagcac aaggagcagt tggggtgcaa
2281 gaagatgggg tgcagcgccc ccaaggacag acatttggga attagtggtc tccctgatgc
2341 ccatagttcc ccaggaactc aggtgggtct gcggcagcac agtaggagta ttcctcctac
2401 tttaactttt cttgtcagac gtagtttagg ttcagaaaga ggtcaactca gcaagccagc
2461 tagccgcctt ggggcaccag acacactgcc ccccaccccc tgcttatgta ggcattggga
2521 acccttcaca gaccactggc tgtacagtca ccatcacctg ctgattccag caggccccca
2581 ccttcttgtg gaatcctggg agcactcccc tcttacccct cactgccccc caccccctgc
2641 acatcagcat tcattagatt tgccctgtaa cgtctgattc ctcctttatc tgggttgtag
2701 atggggcata gtgacttcta gaaacctaac aagggaataa atgtaagatg tgctttc
//