LOCUS AK041014 1433 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male aorta and vein cDNA, RIKEN full-length
enriched library, clone:A530061A11 product:hypothetical
Immunoglobulin and major histocompatibility complex
domain/Immunoglobulin subtype containing protein, full insert
sequence.
ACCESSION AK041014
VERSION AK041014.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1433)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A530061A11
FEATURES Location/Qualifiers
source 1..1433
/clone="A530061A11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A530061A11"
/db_xref="MGI:2405884"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="aorta and vein"
CDS 72..914
/codon_start=1
/note="hypothetical Immunoglobulin and major
histocompatibility complex domain/Immunoglobulin subtype
containing protein (InterPro|IPR003006
InterPro|IPR003599, evidence: InterPro)"
/note="putative"
/protein_id="BAC30780.1"
/transl_table=1
/translation="MEISSGLLFLGHLIVLTYGHPTLKTPESVTGTWKGDVKIQCIYD
PLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINT
LQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRKYNPPRINTEAPTTLHSSLEATTI
MSSTSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLCCIVAVTIPYILFRCRTFQQE
YVYGVSRVFARKTSNSEETTRVTTIATDEPDSQALISDYSDDPCLSQEYQITIRSTMS
IPAC"
regulatory 1411..1416
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1433
/note="putative"
BASE COUNT 417 a 351 c 289 g 376 t
ORIGIN
1 gagctaccag cacttccagg ttcttcagca gcaagaggat ggaaggatga atagaagtag
61 cttcaaatag gatggagatc tcatcaggct tgctgttcct gggccaccta atagtgctca
121 cctatggcca ccccacccta aaaacacctg agagtgtgac agggacctgg aaaggagatg
181 tgaagattca gtgcatctat gatcccctga gaggctacag gcaagttttg gtgaaatggc
241 tggtaagaca cggctctgac tccgtcacca tcttcctacg tgactccact ggagaccata
301 tccagcaggc aaagtacaga ggccgcctga aagtgagcca caaagttcca ggagatgtgt
361 ccctccaaat aaataccctg cagatggatg acaggaatca ctatacatgt gaggtcacct
421 ggcagactcc tgatggaaac caagtaataa gagataagat cattgagctc cgtgttcgga
481 aatataatcc acctagaatc aatactgaag cacctacaac cctgcactcc tctttggaag
541 caacaactat aatgagttca acctctgact tgaccactaa tgggactgga aaacttgagg
601 agaccattgc tggttcaggg aggaacctgc caatctttgc cataatcttc atcatctccc
661 tttgctgcat agtagctgtc accatacctt atatcttgtt ccgctgcagg acattccaac
721 aagagtatgt ctatggagtg agcagggtgt ttgccaggaa gacaagcaac tctgaagaaa
781 ccacaagggt gactaccatc gcaactgatg aaccagattc ccaggctctg attagtgact
841 actctgatga tccttgcctc agccaggagt accaaataac catcagatca acaatgtcta
901 ttcctgcctg ctgaacacag tttccagaaa ctaagaagtt cttgctactg aagaaaataa
961 catctgctaa aatgccccta ctaagtcaag gtctactggc gtaattacct gttacttatt
1021 tactacttgc cttcaacata gctttctccc tggcttcctt tcttcttaga caacctaaag
1081 tatctatcta gtctgccaat tctggggcca ttgagaaatc ctgggtttgg ctaagaatgt
1141 actacatgca cctcaagaaa tctagcttct gggcttcacc cagaacaatt ttcttcctag
1201 ggccttcaca actcttctcc aaacagcaga gaaattccat agcagtagag gttctttatc
1261 atgcctccag acagcgtgag tctcagtcct acaaactcag acaagcacat gggtctagga
1321 ttactcctct ttctctaggg ccagatgact tttaattgat attactattg ctacattatg
1381 aatctaatgc acatgtattc ttttgttgtt aataaatgtt taatcatgac atc
//