LOCUS       AK037467                2944 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A130020I07 product:CD8 antigen, alpha
            chain, full insert sequence.
ACCESSION   AK037467
VERSION     AK037467.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A130020I07
FEATURES             Location/Qualifiers
     source          1..2944
                     /clone="A130020I07"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A130020I07"
                     /db_xref="MGI:2401935"
                     /db_xref="taxon:10090"
                     /dev_stage="16 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     CDS             6..674
                     /codon_start=1
                     /note="CD8 antigen, alpha chain (MGD|MGI:88346
                     GB|AJ131778, evidence: BLASTN, 99%, match=804)"
                     /note="putative"
                     /protein_id="BAC29812.1"
                     /transl_table=1
                     /translation="MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAE
                     LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF
                     SAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRT
                     PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLIC
                     YHSR"
BASE COUNT          805 a          687 c          673 g          779 t
ORIGIN      
        1 gacccatggc ctcaccgttg acccgctttc tgtcgctgaa cctgctgctg ctgggtgagt
       61 cgattatcct ggggagtgga gaagctaagc cacaggcacc cgaactccga atctttccaa
      121 agaaaatgga cgccgaactt ggtcagaagg tggacctggt atgtgaagtg ttggggtccg
      181 tttcgcaagg atgctcttgg ctcttccaga actccagctc caaactcccc cagcccacct
      241 tcgttgtcta tatggcttca tcccacaaca agataacgtg ggacgagaag ctgaattcgt
      301 cgaaactgtt ttctgccatg agggacacga ataataagta cgttctcacc ctgaacaagt
      361 tcagcaagga aaacgaaggc tactatttct gctcagtcat cagcaactcg gtgatgtact
      421 tcagttctgt cgtgccagtc cttcagaaag tgaactctac tactaccaag ccagtgctgc
      481 gaactccctc acctgtgcac cctaccggga catctcagcc ccagagacca gaagattgtc
      541 ggccccgtgg ctcagtgaag gggaccggat tggacttcgc ctgtgatatt tacatctggg
      601 cacccttggc cggaatctgc gtggcccttc tgctgtcctt gatcatcact ctcatctgct
      661 accacagccg ctagtcagac aggaaggcaa gcccagacct tcagagaaaa ttgtgtaaaa
      721 tggcaccgcc aggaagctac aactactaca tgacttcaga gatctcttct tgcaagaggc
      781 caggccctcc tttttcaagt ttcctgctgt cttatgtatt gccctctgta ttgttttagt
      841 aggggtgtga tggggacagt tcctttttct ttatgaattc tctttgacac gaagcatact
      901 tgtatgcata caatgggagt aatgagcaga ctgtaacacc agagctagtt ccagtttcgg
      961 ggtccatgtc gctggtggcc tcagcaccca cttgatataa atctcctgtc tgcccatcat
     1021 atagaagaag ctgaagatca gaggtggaaa cagcaggatc tgtagacccg gagagaaccc
     1081 aagctagagg aaccctcact gactggtgca gggatctcac ccccatcccc tgagctctct
     1141 gtttaggtat gtgtctttag tatagcatgc ttgtgcctca aactgcaagg aagcaagtgg
     1201 tatgaatctg tgatctgctc agctctggct gtgagcatca gatgtaacaa atcaaagtca
     1261 ggagaactgc ctttagcggt gcacctggac atcagagccc cttgtaagaa ctgggaaatt
     1321 gctggcagtc tagtggagcg gtacggtaaa tctggaaaac actcccctct gtcactgaag
     1381 gctgtagtag aatccaatta aagctattca aaccactgcc gcagaccctc tgggtccctg
     1441 tgtctgcgtg gaatgggtct ctcgagcagg tgggcaaagc gtaggattaa actgacaaac
     1501 agatgcacac aggagaggcg ttgaatctga atgtaatgtc aggtcgaacc tcggactttt
     1561 tataatacag aaaaaattcc aggggcgata tgtcacacca gacaaggtac actgaaattt
     1621 accagataca agagaatgac ttcgaaagga atttgcagga actagataaa tgtttacaat
     1681 agagattatc agccctgcct aggatcatca gcctagtgcc aggtaagaat ttcacacttt
     1741 agtgttaaaa gcaccagggg gtaattactc ttggcaggcc tcaagaataa tgtagtgtca
     1801 cggaccccta aattcctagg ccttgttaaa tcttatcttg tctggagaat ccccatttat
     1861 caggagagta tctcaacttg ctcttggcat ggaatgtagc ctgtactaaa gatttttatc
     1921 tcagtgagat tcacaggctc tttctgcaga ccagatgagc taatggcctt gtttattgta
     1981 atgcttaatt agttactgaa taggttaagc tccttgctgt tatctgggat cttggaacaa
     2041 tgggggcttt agctatgtca gaattcaatc ttaaaaggca cttacaatag ggtaatgctt
     2101 aatagagggc acatggatcc atacactaga ctaacgcggg agtggaaaat taatttatgg
     2161 tttagaggga acgccagact ccaggaggga atttctgtga aactcttttc cttgtgggca
     2221 gcttccaagc ttccgcttgt caaactgacc caactggaga gcgtggcttt caccagactc
     2281 caggagggag ctttcgtgaa actcttcctc atgagatagc ttccaagctt tcgcctgtca
     2341 agctgactcc accagagtgc gtggcaaacc accactgtga aattcctgta gaattatgat
     2401 tctctctgct cttggacagc agagggtgag gtttgacaga tacgactcag gcatcagaga
     2461 agctgcaggc aggccctctc ccatgtctaa acatgagact tggatgtgct cctgggatca
     2521 ccagcatgct ttatactcta taaacataga atccttggag aacattcctt agcacccccg
     2581 gaaggcagat gtaaagaggc agactagacg tggaggaaga cgctgactgt caaaactgct
     2641 gccccagagc taatttcctc tcacagtacc atataagtaa caaataatag gcaataaaaa
     2701 cctgaaggaa ctaagagtca cccatggtcc tctatctatt gttactatca ttttatacct
     2761 gattatttcc tatgcatata tatgtaagaa agattacacc ctgggtttta aaacacaaca
     2821 gtttttgtaa gcagatttag taaataaaca tgtatattat catttaatgg ttaaatagca
     2881 tttcatagtt tggttgtatc catttagtat taaattgttt caaacttccc cctactatta
     2941 cacg
//