LOCUS AK037467 2944 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130020I07 product:CD8 antigen, alpha chain, full insert sequence. ACCESSION AK037467 VERSION AK037467.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2944) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A130020I07 FEATURES Location/Qualifiers source 1..2944 /clone="A130020I07" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A130020I07" /db_xref="MGI:2401935" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" CDS 6..674 /codon_start=1 /note="CD8 antigen, alpha chain (MGD|MGI:88346 GB|AJ131778, evidence: BLASTN, 99%, match=804)" /note="putative" /protein_id="BAC29812.1" /transl_table=1 /translation="MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAE LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF SAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRT PSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFACDIYIWAPLAGICVALLLSLIITLIC YHSR" BASE COUNT 805 a 687 c 673 g 779 t ORIGIN 1 gacccatggc ctcaccgttg acccgctttc tgtcgctgaa cctgctgctg ctgggtgagt 61 cgattatcct ggggagtgga gaagctaagc cacaggcacc cgaactccga atctttccaa 121 agaaaatgga cgccgaactt ggtcagaagg tggacctggt atgtgaagtg ttggggtccg 181 tttcgcaagg atgctcttgg ctcttccaga actccagctc caaactcccc cagcccacct 241 tcgttgtcta tatggcttca tcccacaaca agataacgtg ggacgagaag ctgaattcgt 301 cgaaactgtt ttctgccatg agggacacga ataataagta cgttctcacc ctgaacaagt 361 tcagcaagga aaacgaaggc tactatttct gctcagtcat cagcaactcg gtgatgtact 421 tcagttctgt cgtgccagtc cttcagaaag tgaactctac tactaccaag ccagtgctgc 481 gaactccctc acctgtgcac cctaccggga catctcagcc ccagagacca gaagattgtc 541 ggccccgtgg ctcagtgaag gggaccggat tggacttcgc ctgtgatatt tacatctggg 601 cacccttggc cggaatctgc gtggcccttc tgctgtcctt gatcatcact ctcatctgct 661 accacagccg ctagtcagac aggaaggcaa gcccagacct tcagagaaaa ttgtgtaaaa 721 tggcaccgcc aggaagctac aactactaca tgacttcaga gatctcttct tgcaagaggc 781 caggccctcc tttttcaagt ttcctgctgt cttatgtatt gccctctgta ttgttttagt 841 aggggtgtga tggggacagt tcctttttct ttatgaattc tctttgacac gaagcatact 901 tgtatgcata caatgggagt aatgagcaga ctgtaacacc agagctagtt ccagtttcgg 961 ggtccatgtc gctggtggcc tcagcaccca cttgatataa atctcctgtc tgcccatcat 1021 atagaagaag ctgaagatca gaggtggaaa cagcaggatc tgtagacccg gagagaaccc 1081 aagctagagg aaccctcact gactggtgca gggatctcac ccccatcccc tgagctctct 1141 gtttaggtat gtgtctttag tatagcatgc ttgtgcctca aactgcaagg aagcaagtgg 1201 tatgaatctg tgatctgctc agctctggct gtgagcatca gatgtaacaa atcaaagtca 1261 ggagaactgc ctttagcggt gcacctggac atcagagccc cttgtaagaa ctgggaaatt 1321 gctggcagtc tagtggagcg gtacggtaaa tctggaaaac actcccctct gtcactgaag 1381 gctgtagtag aatccaatta aagctattca aaccactgcc gcagaccctc tgggtccctg 1441 tgtctgcgtg gaatgggtct ctcgagcagg tgggcaaagc gtaggattaa actgacaaac 1501 agatgcacac aggagaggcg ttgaatctga atgtaatgtc aggtcgaacc tcggactttt 1561 tataatacag aaaaaattcc aggggcgata tgtcacacca gacaaggtac actgaaattt 1621 accagataca agagaatgac ttcgaaagga atttgcagga actagataaa tgtttacaat 1681 agagattatc agccctgcct aggatcatca gcctagtgcc aggtaagaat ttcacacttt 1741 agtgttaaaa gcaccagggg gtaattactc ttggcaggcc tcaagaataa tgtagtgtca 1801 cggaccccta aattcctagg ccttgttaaa tcttatcttg tctggagaat ccccatttat 1861 caggagagta tctcaacttg ctcttggcat ggaatgtagc ctgtactaaa gatttttatc 1921 tcagtgagat tcacaggctc tttctgcaga ccagatgagc taatggcctt gtttattgta 1981 atgcttaatt agttactgaa taggttaagc tccttgctgt tatctgggat cttggaacaa 2041 tgggggcttt agctatgtca gaattcaatc ttaaaaggca cttacaatag ggtaatgctt 2101 aatagagggc acatggatcc atacactaga ctaacgcggg agtggaaaat taatttatgg 2161 tttagaggga acgccagact ccaggaggga atttctgtga aactcttttc cttgtgggca 2221 gcttccaagc ttccgcttgt caaactgacc caactggaga gcgtggcttt caccagactc 2281 caggagggag ctttcgtgaa actcttcctc atgagatagc ttccaagctt tcgcctgtca 2341 agctgactcc accagagtgc gtggcaaacc accactgtga aattcctgta gaattatgat 2401 tctctctgct cttggacagc agagggtgag gtttgacaga tacgactcag gcatcagaga 2461 agctgcaggc aggccctctc ccatgtctaa acatgagact tggatgtgct cctgggatca 2521 ccagcatgct ttatactcta taaacataga atccttggag aacattcctt agcacccccg 2581 gaaggcagat gtaaagaggc agactagacg tggaggaaga cgctgactgt caaaactgct 2641 gccccagagc taatttcctc tcacagtacc atataagtaa caaataatag gcaataaaaa 2701 cctgaaggaa ctaagagtca cccatggtcc tctatctatt gttactatca ttttatacct 2761 gattatttcc tatgcatata tatgtaagaa agattacacc ctgggtttta aaacacaaca 2821 gtttttgtaa gcagatttag taaataaaca tgtatattat catttaatgg ttaaatagca 2881 tttcatagtt tggttgtatc catttagtat taaattgttt caaacttccc cctactatta 2941 cacg //