LOCUS AK037385 3377 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130013D22 product:CD84 antigen, full insert sequence. ACCESSION AK037385 VERSION AK037385.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3377) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A130013D22 FEATURES Location/Qualifiers source 1..3377 /clone="A130013D22" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A130013D22" /db_xref="MGI:2401854" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" CDS 34..456 /codon_start=1 /note="CD84 antigen (MGD|MGI:1336885 GB|NM_013489, evidence: BLASTN, 100%, match=413)" /note="putative" /protein_id="BAC29799.1" /transl_table=1 /translation="MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQ EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA GTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI" regulatory 3360..3365 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 3377 /note="putative" BASE COUNT 1168 a 627 c 697 g 885 t ORIGIN 1 ttttttcctc agaagactgg agtctgactg gacatggccc agcgccatct gtggatctgg 61 ttcctttgcc tacaaacctg gtctgaagca gcaggaaaag atgcagaccc ggtggtaatg 121 aatgggattc ttggggagtc agttactttc ctcttaaata ttcaagaacc aaagaaaatt 181 gacaacattg cctggacttc tcaatcatct gttgctttta taaaaccagg agtcaataaa 241 gctgaagtta ccataaccca gggcacttat aaaggacgaa tagaaatcat agatcagaag 301 tatgacctgg tcattagaga cctgaggatg gaagatgcag gaacttacaa agcagacatc 361 aatgaagaga atgaggaaac catcaccaag atctactacc ttcatatcta ccgtaagtta 421 tggcagcacg gggccttgga tttacttttg atttgaagat ttatgatcta aaccacaccc 481 atatttctga taacagagtt tcctaactct tcttatcctt ataattacat aagcacatca 541 gtacttataa aggtctaact ttacttctgg ccttgacaga ctttagctgt aatctgtttt 601 gcagcagaat ttgtcctctg ttctttgttt tcctttccta taaaatgtca ataatcatat 661 taatcaattt gtaagcatta ttatgacatt ctagtaagaa actatatgca gagtggtctt 721 tataaggctt ctgcttttaa gataattaca gaatgcatag gaaaatgcaa agaactatga 781 aaggatgtgt tctgtgccct tctcttgccc tctcctctgt tatactagat ccaaactctt 841 agtctcatcc cccgtcttat acagaccttc tggggtagcc tttcttcatt gtctctcctg 901 attccaaaga gataaaataa gcagatcctg gcacacacct ttgattccag cactcaggag 961 gcaaagacag aaggatctct atgagttcaa ggctagcttg gtcttcagag aaagttccag 1021 aacagccaag actaacaaaa agaaaccctt tctcaaacca acctcccatc cccatcctca 1081 ccccccaaaa actactagaa tgaaagaaaa aaaagtacca agacacaaaa tgaacagtgt 1141 ctgaggaact cttatttctg taagtattaa tactttcaga aatgcagaac agtgttcaag 1201 gtcaaaaaca gaaaattgga actttcttgg aatgtgccag cacttactta ggaatggaat 1261 cacttatatt cctatagaat ttaatcacat atatagcacc ggacagcatt aatcacatat 1321 atagcaccgg acatcataag caaggtagta gtgaagcacc atcccaacat tttcttgtct 1381 cagttctgca gggcagagaa ctgttagccc tgactccagc tttttctacc taacagtttt 1441 gtgcaggtga catctcgtcc ctgctgagaa aatgaaatga gatttagttt tcaccactat 1501 ggctgtacca atacctaccc caacgggtgg cacacacaca cacacacaca cacacacaca 1561 cacacacaca cacacacaca cgtctctccg aaaataggta aataatgata cttttcttgt 1621 gtttcggcta ttttggaata ttcagagcct actgttgtag aatagctggg ataaaatgga 1681 gacatcctgc ccaggctgtt attgactgtg cttttttgtt ggcatctagg catctgggac 1741 tgggatgatt ataaatctag gtgatgatgt ttggatttgt ctttgttggg tgggtggctt 1801 gttccttgtt ttctgtttcc tctctggatt ttcagagagt gtggtagctc tatgttttag 1861 taggacattt tctttggatc tgacatttat agccactgga ggttctcaat aaaagatgtt 1921 tctgggtatt gggagctaac acttaggacc tgtgataggt taggagtatg aaagtgttca 1981 taggagagag aagaagagtg tttagccagg atctgtttat ttcatcccct tggaatcagg 2041 gagacagtaa agtgaggtca acccacaggg tcttctctag atactgggga tgagactggg 2101 aagttggatc tagaggaaca gaaggaaaca ggaagatata caggctccta tctgcttctg 2161 ggcaggaatg atctgggtta gcagggagtg cctgctgaag atgagggctg ggataaacca 2221 acaagtgggg agaaggtggg tagaaaggga agatctgtgg aaccacaata gatgtgggat 2281 tggggatgtg caggagtggg gacattagaa ggaaggctgc agcaggtgtt ctgttgcaga 2341 gctagggatg aagctggagc tttagatttg taggagagga agccttctgt tagcttacat 2401 gtttcccagg cctgcttggg tggtgtgttc acaaggaaca ctggttttgg ggacttgttt 2461 actggaatga attgggggaa ggaaggttgg agtagaagat agaggtcctc aaagagaaaa 2521 ttaataagtc cacaaaatcc aagcaaacag tggaaagaag tgaataaact gtataagact 2581 tgaaaatgaa aataaaatca ataaagaaaa ctaaaaccga gagaattcta gaaatgaaaa 2641 ttttaagaat ttgaacagaa attacagagg taaacttcac caacaaaata tgagagatgg 2701 aagagagaat attaggcatt gaagatacaa tagagaaaat gaatatatca gtcaaagaaa 2761 atgttaacca aaaaaaaaaa aaggtcctac caaaaaatac aaaaaattta ggaccctaag 2821 aaaagacaaa accctaagac taatagaaat ataggaagga gaagaattct acctcaaggg 2881 cccagaaaat atttcaacaa aatcatagaa gaaaaatttt ctcacctaaa gaagatagat 2941 gcctataagg tatatgaagc atatataaca acaaatagat ttaacaagaa aataaactct 3001 ccttggcaca taacagtcaa atcacaaagc atacagaaca aagaaagaat attaaaagct 3061 acaaggggaa aaggccaagt agtatataaa tgcagaccta gaatgatacc tgatttctca 3121 gtgaagactc taaaggccaa tagagtctgg acaaatgtgc tataaactct aagagacccc 3181 agaggtcatc cctgattact atacccacca aaatatccaa catcctaaat ggaaaaaata 3241 ggatattcca taataaagcc aaatttaaac aatatctgtc tacaaatcca tctatagaag 3301 atgacagggc ggaaaattcc aaccaaaaga gtttaactat accaaataaa aacaaaagga 3361 ataaacaatc tcaaagc //