LOCUS       AK037385                3377 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A130013D22 product:CD84 antigen, full
            insert sequence.
ACCESSION   AK037385
VERSION     AK037385.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3377)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A130013D22
FEATURES             Location/Qualifiers
     source          1..3377
                     /clone="A130013D22"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A130013D22"
                     /db_xref="MGI:2401854"
                     /db_xref="taxon:10090"
                     /dev_stage="16 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     CDS             34..456
                     /codon_start=1
                     /note="CD84 antigen (MGD|MGI:1336885 GB|NM_013489,
                     evidence: BLASTN, 100%, match=413)"
                     /note="putative"
                     /protein_id="BAC29799.1"
                     /transl_table=1
                     /translation="MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQ
                     EPKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDA
                     GTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI"
     regulatory      3360..3365
                     /note="putative"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      3377
                     /note="putative"
BASE COUNT         1168 a          627 c          697 g          885 t
ORIGIN      
        1 ttttttcctc agaagactgg agtctgactg gacatggccc agcgccatct gtggatctgg
       61 ttcctttgcc tacaaacctg gtctgaagca gcaggaaaag atgcagaccc ggtggtaatg
      121 aatgggattc ttggggagtc agttactttc ctcttaaata ttcaagaacc aaagaaaatt
      181 gacaacattg cctggacttc tcaatcatct gttgctttta taaaaccagg agtcaataaa
      241 gctgaagtta ccataaccca gggcacttat aaaggacgaa tagaaatcat agatcagaag
      301 tatgacctgg tcattagaga cctgaggatg gaagatgcag gaacttacaa agcagacatc
      361 aatgaagaga atgaggaaac catcaccaag atctactacc ttcatatcta ccgtaagtta
      421 tggcagcacg gggccttgga tttacttttg atttgaagat ttatgatcta aaccacaccc
      481 atatttctga taacagagtt tcctaactct tcttatcctt ataattacat aagcacatca
      541 gtacttataa aggtctaact ttacttctgg ccttgacaga ctttagctgt aatctgtttt
      601 gcagcagaat ttgtcctctg ttctttgttt tcctttccta taaaatgtca ataatcatat
      661 taatcaattt gtaagcatta ttatgacatt ctagtaagaa actatatgca gagtggtctt
      721 tataaggctt ctgcttttaa gataattaca gaatgcatag gaaaatgcaa agaactatga
      781 aaggatgtgt tctgtgccct tctcttgccc tctcctctgt tatactagat ccaaactctt
      841 agtctcatcc cccgtcttat acagaccttc tggggtagcc tttcttcatt gtctctcctg
      901 attccaaaga gataaaataa gcagatcctg gcacacacct ttgattccag cactcaggag
      961 gcaaagacag aaggatctct atgagttcaa ggctagcttg gtcttcagag aaagttccag
     1021 aacagccaag actaacaaaa agaaaccctt tctcaaacca acctcccatc cccatcctca
     1081 ccccccaaaa actactagaa tgaaagaaaa aaaagtacca agacacaaaa tgaacagtgt
     1141 ctgaggaact cttatttctg taagtattaa tactttcaga aatgcagaac agtgttcaag
     1201 gtcaaaaaca gaaaattgga actttcttgg aatgtgccag cacttactta ggaatggaat
     1261 cacttatatt cctatagaat ttaatcacat atatagcacc ggacagcatt aatcacatat
     1321 atagcaccgg acatcataag caaggtagta gtgaagcacc atcccaacat tttcttgtct
     1381 cagttctgca gggcagagaa ctgttagccc tgactccagc tttttctacc taacagtttt
     1441 gtgcaggtga catctcgtcc ctgctgagaa aatgaaatga gatttagttt tcaccactat
     1501 ggctgtacca atacctaccc caacgggtgg cacacacaca cacacacaca cacacacaca
     1561 cacacacaca cacacacaca cgtctctccg aaaataggta aataatgata cttttcttgt
     1621 gtttcggcta ttttggaata ttcagagcct actgttgtag aatagctggg ataaaatgga
     1681 gacatcctgc ccaggctgtt attgactgtg cttttttgtt ggcatctagg catctgggac
     1741 tgggatgatt ataaatctag gtgatgatgt ttggatttgt ctttgttggg tgggtggctt
     1801 gttccttgtt ttctgtttcc tctctggatt ttcagagagt gtggtagctc tatgttttag
     1861 taggacattt tctttggatc tgacatttat agccactgga ggttctcaat aaaagatgtt
     1921 tctgggtatt gggagctaac acttaggacc tgtgataggt taggagtatg aaagtgttca
     1981 taggagagag aagaagagtg tttagccagg atctgtttat ttcatcccct tggaatcagg
     2041 gagacagtaa agtgaggtca acccacaggg tcttctctag atactgggga tgagactggg
     2101 aagttggatc tagaggaaca gaaggaaaca ggaagatata caggctccta tctgcttctg
     2161 ggcaggaatg atctgggtta gcagggagtg cctgctgaag atgagggctg ggataaacca
     2221 acaagtgggg agaaggtggg tagaaaggga agatctgtgg aaccacaata gatgtgggat
     2281 tggggatgtg caggagtggg gacattagaa ggaaggctgc agcaggtgtt ctgttgcaga
     2341 gctagggatg aagctggagc tttagatttg taggagagga agccttctgt tagcttacat
     2401 gtttcccagg cctgcttggg tggtgtgttc acaaggaaca ctggttttgg ggacttgttt
     2461 actggaatga attgggggaa ggaaggttgg agtagaagat agaggtcctc aaagagaaaa
     2521 ttaataagtc cacaaaatcc aagcaaacag tggaaagaag tgaataaact gtataagact
     2581 tgaaaatgaa aataaaatca ataaagaaaa ctaaaaccga gagaattcta gaaatgaaaa
     2641 ttttaagaat ttgaacagaa attacagagg taaacttcac caacaaaata tgagagatgg
     2701 aagagagaat attaggcatt gaagatacaa tagagaaaat gaatatatca gtcaaagaaa
     2761 atgttaacca aaaaaaaaaa aaggtcctac caaaaaatac aaaaaattta ggaccctaag
     2821 aaaagacaaa accctaagac taatagaaat ataggaagga gaagaattct acctcaaggg
     2881 cccagaaaat atttcaacaa aatcatagaa gaaaaatttt ctcacctaaa gaagatagat
     2941 gcctataagg tatatgaagc atatataaca acaaatagat ttaacaagaa aataaactct
     3001 ccttggcaca taacagtcaa atcacaaagc atacagaaca aagaaagaat attaaaagct
     3061 acaaggggaa aaggccaagt agtatataaa tgcagaccta gaatgatacc tgatttctca
     3121 gtgaagactc taaaggccaa tagagtctgg acaaatgtgc tataaactct aagagacccc
     3181 agaggtcatc cctgattact atacccacca aaatatccaa catcctaaat ggaaaaaata
     3241 ggatattcca taataaagcc aaatttaaac aatatctgtc tacaaatcca tctatagaag
     3301 atgacagggc ggaaaattcc aaccaaaaga gtttaactat accaaataaa aacaaaagga
     3361 ataaacaatc tcaaagc
//