LOCUS AK036429 1741 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male bone cDNA, RIKEN full-length enriched
library, clone:9830106J05 product:signaling lymphocyte activation
molecule, full insert sequence.
ACCESSION AK036429
VERSION AK036429.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9830106J05
FEATURES Location/Qualifiers
source 1..1741
/clone="9830106J05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9830106J05"
/db_xref="MGI:2400855"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="bone"
CDS 72..1103
/codon_start=1
/note="putative"
/note="signaling lymphocyte activation molecule
(MGD|MGI:1351314 GB|NM_013730, evidence: BLASTN, 99%,
match=946)"
/protein_id="BAC29424.1"
/transl_table=1
/translation="MDPKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTW
LPLTNEHQINKSVNKSVRILVTMATSPGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSK
NLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGT
CSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPV
SSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHC
QPPVEEKSLTIYAQVQKSGPQEKKLHDALTDQDPCTTIYVAATEPAPESVQEPNPTTV
YASVTLPES"
BASE COUNT 510 a 436 c 400 g 395 t
ORIGIN
1 gaagcagctg tcctgccgag ctgagctgag ctgagctcac agctggggac cctgtctgcg
61 attgctggct aatggatccc aaaggatccc tttcctggag aatacttctg tttctctccc
121 tggcttttga gttgagctac ggaacaggtg gaggtgtgat ggattgccca gtgattctcc
181 agaagctggg acaggacacg tggctgcccc tgacgaatga acatcagata aataagagcg
241 tgaacaaaag tgtccgcatc ctcgtcacca tggcgacgtc cccaggtagc aaatccaaca
301 agaaaattgt gtcttttgat ctctctaaag ggagctatcc agatcacctg gaggatggct
361 accactttca atcaaaaaac ctgagcctga agatcctcgg gaacaggcgg gagagtgaag
421 gatggtactt ggtgagcgtg gaggagaacg tttctgttca gcaattctgc aagcagctga
481 agctttatga acaggtctcc cctccagaga ttaaagtgct aaacaaaacc caggagaacg
541 agaatgggac ctgcagcttg ctgttggcct gcacagtgaa gaaaggggac catgtgactt
601 acagctggag tgatgaggca ggcacccacc tgctgagccg agccaaccgc tcccacctcc
661 tgcacatcac tcttagcaac cagcatcaag acagcatcta caactgcacc gcaagcaacc
721 ctgtcagcag tatctctagg accttcaacc tatcatcgca agcatgcaag caggaatcct
781 cctcagaatc gagtccatgg atgcaatata ctcttgtacc actgggggtc gttataatct
841 tcatcctggt tttcacggca ataataatga tgaaaagaca aggtaaatca aatcactgcc
901 agccaccagt ggaagaaaaa agccttacta tttatgccca agtacagaaa tcagggcctc
961 aagagaagaa acttcatgat gccctaacag atcaggaccc ctgcacaacc atttatgtgg
1021 ctgccacaga gcctgcccca gagtctgtcc aggaaccaaa ccccaccaca gtttatgcca
1081 gtgtgacact gccagagagc tgacccatat acccagtgaa aggacttttt gaaggaggat
1141 agaagaacca aaatccacac tgaactggac cccgggtccc aagttctctg tgacagaaac
1201 tgcacatctg taaccttctc caatcagttc cctggtgacg gatctgcaca ggcgtgctta
1261 tgaagtagat gagaagtgag gcttcctggg catgcaacct gctctgctgc tgacacagat
1321 atgaagcaga gatcccgtgg tacagtgtac catctttgct gtagcagata atgtgggttt
1381 aggcatctca ctctttgctg gactggataa cagaactcaa aaaaaaacca acaagccaaa
1441 gacatagact ccatctcaga tggctgagca caaagtataa aagccatttt ggctctctgg
1501 actttattct ggaagctgat cctgatcacc tcaaggccaa gggctccatg cctcagtttc
1561 tctctcaccc tctagatgaa gagggaacaa agcataaaga gtgaaatcct tgttgtctga
1621 gatcattcta taaacgaact gacattttat ttgcaaaact caagctagta attcagtaga
1681 cttgaagatg attttagagc ctcttatgct tcaaacaaca gaatgaaatc catccaatgt
1741 t
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