LOCUS       AK030812                4242 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830411K06 product:CD28 antigen, full insert
            sequence.
ACCESSION   AK030812
VERSION     AK030812.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4242)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=5830411K06
FEATURES             Location/Qualifiers
     source          1..4242
                     /clone="5830411K06"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:5830411K06"
                     /db_xref="MGI:2393983"
                     /db_xref="taxon:10090"
                     /dev_stage="adult"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /sex="male"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     CDS             9..665
                     /codon_start=1
                     /note="CD28 antigen (MGD|MGI:88327 GB|NM_007642,
                     evidence: BLASTN, 99%, match=1440)"
                     /note="putative"
                     /protein_id="BAC27143.1"
                     /transl_table=1
                     /translation="MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYS
                     YNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWN
                     LHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHTQSSPELFWALVVVAGV
                     LFCYGLLVTVALCVIWTNSRRNRLLQSDYMNMTPRRPGLTRKPYQPYAPARDFAAYRP
                     "
     regulatory      4220..4225
                     /note="putative"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      4242
                     /note="putative"
BASE COUNT         1159 a          887 c          842 g         1354 t
ORIGIN      
        1 tgagaacaat gacactcagg ctgctgttct tggctctcaa cttcttctca gttcaagtaa
       61 cagaaaacaa gattttggta aagcagtcgc ccctgcttgt ggtagatagc aacgaggtca
      121 gcctcagctg caggtattcc tacaaccttc tcgcaaagga attccgggca tccctgtaca
      181 agggcgtgaa cagcgacgtg gaagtctgtg tcgggaatgg gaattttacc tatcagcccc
      241 agtttcgctc gaatgccgag ttcaactgcg acggggattt cgacaacgaa acagtgacgt
      301 tccgtctctg gaatctgcac gtcaatcaca cagatattta cttctgcaaa attgagttca
      361 tgtaccctcc gccttaccta gacaacgaga ggagcaatgg aactattatt cacataaaag
      421 agaaacatct ttgtcatact cagtcatctc ctgagctgtt ttgggcactg gtcgtggttg
      481 ctggagtcct gttttgttat ggcttgctag tgacagtggc tctttgtgtt atctggacaa
      541 atagtagaag gaacagactc cttcaaagtg actacatgaa catgactccc cggaggcctg
      601 ggctcactcg aaagccttac cagccctacg cccctgccag agactttgca gcgtaccgcc
      661 cctgacaggg acccctatcc agaagcccgc cggctggtac ccgtctacct gctcatcatc
      721 actgctctgg ataggaaagg acagcctcat cttcagccgg ccactttgga cctctactgg
      781 gccaccaatg ccaactattt tagagtgtct agatctaaca tcatgatcat cttgagactc
      841 tggaatgaat gacagaagct tctatggcag gataaagtct gtgtggcttg acccaaactc
      901 aagcttaata catttattga cttgattggg gaagttagag tagagcaatc aaaaagatca
      961 ttcattcagc cttgggaagt caatttgcag gctcctggat gagccctgcc ccgttttcac
     1021 ttgccagcac atttcagtca tgtggtgtga tagccaaaga tgttttggac agagaagaaa
     1081 ggatagaaaa accttctctt tggctaagtt ggtgtttggg gtggggatag gttagagtat
     1141 agtacataac tatttgaaaa ataatgaaaa cacttttttc actcatgaaa tgagccactt
     1201 agctcctaaa tagtgttttc ctgttagttt agaaagttgt ggacatattt ttttaatgat
     1261 ttctgaccat ttttaatcac attgactcat ggaatggcct caaagcaccc cccagtgctt
     1321 ctttcctcat tcccggtcat gggaactcag tattattaat agtcacaaca tgatttcaga
     1381 actagatagc cctcccacac caagaagaat gtgagaggaa gtaaggtcac tttatgtaaa
     1441 aaaaaaaaaa aacaaacgcg tacacatatg tatgtataca tacataccta tgtgcacaca
     1501 cacacacata tacatacaca caaaatgcta tgaagagtta tctgtttagt agcctgttat
     1561 agtcaaatca ttttaagttt caacttctta cagttgggcc acttgttgtc ctttgtggat
     1621 ggatatctga aattgtgtct atatattgct agtcatgata ctgtgaacaa aaagggtagt
     1681 gttagtattt gtcagggtgg taaggatgca ttccaggaag cttcctctga ggaagggaat
     1741 gaggtcattc ttgccatgta tgaaagacat agatgttttc cagaaggcac cattgggagc
     1801 cccagtataa gttcctttag actctacagt ttagagggat tttatatgtc ctaggactca
     1861 ggactccaga actttgtggg ctcagctgct tcataccatg gggatacatt gacatgaaca
     1921 attattttgg aatgtgtctt tagggacgac atcaaagttc tcaagtacct acaagacctg
     1981 atactggaat gaaggtggac tttctttttt gcttccagtt cggatcaact ggaatgtatc
     2041 tggggacctt gaagaacggc tgtccagctg tcttcaccat ttgtatagtg ctttgaatta
     2101 ttcagaggtt ttaaagtcag gaagacctgg tttaaaaaac atttcattat gagttaaatg
     2161 gcctcaggca agtcactgtt catccaagtc tatgactcct caactgtaag atggccacac
     2221 tgaaacttgc taagatcctc tggcctctgc ctcccaagag ttgggatttc aggagtgcac
     2281 aatcatgacc caaactcgtg ataatctctc agcttcaata actttccagc taattggaat
     2341 atcctgtaat caaacatgag gcatttcccc tccccccact gtttttgtgt ataaagagat
     2401 ctttaaactt tttttttaat atgaggggta agaaaagata ggaatctttt aattctagac
     2461 agaagatatt gtgctttggt tttttttttt ttttaatggc ttctattctg tgcttttaat
     2521 taaaccagag aaggccaaga ttagccctac ttgtgtgata aaagaatgct ggcccttgtg
     2581 attgcagtca gcctcttgac acatagagtt cttgaatcta agttataaaa ttatatttga
     2641 aaatgacaga gctggagaat ttatagaaag ggtcatagca aataacaaac catttttttt
     2701 ttaaacggaa agatttggtc tttggcaatc aataactttg ttttctaact ggaaaaggag
     2761 gtttactgga gatgaatcac acctgaaagt tttcatacct cctctgaaca caaccgaaac
     2821 ataggtgtcc aaagcttttc gctctcggta tgaaccaaca ggcgggttaa aaacactggg
     2881 tcagagtaaa gcttttgcag tttcagatgt agtgtgtatg aagaaaacta tgtcacttgc
     2941 tgctattatt gtaagagtct aagaactaaa ggtgtgccta taatttctaa ttatgagctc
     3001 acctatttgg taccgagcat gccaatttta aagagacccg gtgtacctta tagctacatc
     3061 caatgataaa attaccacac tagcacatgc ctgtgtttaa actcgtgctt taatgttttt
     3121 cttagggcag gtatgcaccc cctttgcagt gagttgggag agattttgaa aaagtgtatg
     3181 acaaacattt ttaacacctt tggtttcctc tctctgtgtc tctttgtctc tgtctctctc
     3241 tttctctcct gtgcatatgt ctcccctccc tcacttctct gtctcttcct ctctccctct
     3301 ctctgtcttt ctctgtgtgt ctctctgtct ctgtgtatct ctctgtctgt ctctttctct
     3361 gcagattttc aaaacgttgt ttttctatgg aagaaataca agctgtggtt ggtttgctac
     3421 gagtcagtag cagtttatca gtaggccaat gttttatctc ttggagattt cagtctgggt
     3481 ttacccaatg tattctctgt aatgtgactg ctggggacag atataacgag attgagcctt
     3541 caaatcattt aggtcttcaa tcatttagtc aacggagtga gccactaatc tgcaatggct
     3601 attttaatat gcatactgat ggtcaaatgg atgtctgatc tctcatccca gctttctgta
     3661 ctaccatatg ggaactatat gtaacttgta tacttacctg aatatgttaa attcaactac
     3721 atggtaagat ggaccagaaa ttgcaatgtt catgtccata tagccaccat taacccaagt
     3781 taagcacagt agtgtgggtt ctctcaggac ttgtgaatga gtttatgctc tctacaaaga
     3841 caggtgaagc ttaaatctct cttgcactgc tatgtttatg caaatatcaa gattgtttct
     3901 gtaccaggga cttaacacat tctattcata ctattttccc tgtctacaat gttatttcat
     3961 agatatctac ttggtttgct cttacttcct tgacatattt gcccaaatgc caccttcaac
     4021 tgtagttaat tacctgtaca acctgtctcc atgccttgtt ttattttctc tataactcta
     4081 ctaataggta tttttcttat ttattggttt attgcctgtt ttttttccta aatctacacc
     4141 ggatctccaa agggaaagaa ctccatttgc tttgatttta ttgctgtatc cccagtgcct
     4201 agaataatgc ttagcctgca ataaatattt attcattgac tg
//