LOCUS AK030812 4242 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830411K06 product:CD28 antigen, full insert sequence. ACCESSION AK030812 VERSION AK030812.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4242) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=5830411K06 FEATURES Location/Qualifiers source 1..4242 /clone="5830411K06" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:5830411K06" /db_xref="MGI:2393983" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="thymus" CDS 9..665 /codon_start=1 /note="CD28 antigen (MGD|MGI:88327 GB|NM_007642, evidence: BLASTN, 99%, match=1440)" /note="putative" /protein_id="BAC27143.1" /transl_table=1 /translation="MTLRLLFLALNFFSVQVTENKILVKQSPLLVVDSNEVSLSCRYS YNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQPQFRSNAEFNCDGDFDNETVTFRLWN LHVNHTDIYFCKIEFMYPPPYLDNERSNGTIIHIKEKHLCHTQSSPELFWALVVVAGV LFCYGLLVTVALCVIWTNSRRNRLLQSDYMNMTPRRPGLTRKPYQPYAPARDFAAYRP " regulatory 4220..4225 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 4242 /note="putative" BASE COUNT 1159 a 887 c 842 g 1354 t ORIGIN 1 tgagaacaat gacactcagg ctgctgttct tggctctcaa cttcttctca gttcaagtaa 61 cagaaaacaa gattttggta aagcagtcgc ccctgcttgt ggtagatagc aacgaggtca 121 gcctcagctg caggtattcc tacaaccttc tcgcaaagga attccgggca tccctgtaca 181 agggcgtgaa cagcgacgtg gaagtctgtg tcgggaatgg gaattttacc tatcagcccc 241 agtttcgctc gaatgccgag ttcaactgcg acggggattt cgacaacgaa acagtgacgt 301 tccgtctctg gaatctgcac gtcaatcaca cagatattta cttctgcaaa attgagttca 361 tgtaccctcc gccttaccta gacaacgaga ggagcaatgg aactattatt cacataaaag 421 agaaacatct ttgtcatact cagtcatctc ctgagctgtt ttgggcactg gtcgtggttg 481 ctggagtcct gttttgttat ggcttgctag tgacagtggc tctttgtgtt atctggacaa 541 atagtagaag gaacagactc cttcaaagtg actacatgaa catgactccc cggaggcctg 601 ggctcactcg aaagccttac cagccctacg cccctgccag agactttgca gcgtaccgcc 661 cctgacaggg acccctatcc agaagcccgc cggctggtac ccgtctacct gctcatcatc 721 actgctctgg ataggaaagg acagcctcat cttcagccgg ccactttgga cctctactgg 781 gccaccaatg ccaactattt tagagtgtct agatctaaca tcatgatcat cttgagactc 841 tggaatgaat gacagaagct tctatggcag gataaagtct gtgtggcttg acccaaactc 901 aagcttaata catttattga cttgattggg gaagttagag tagagcaatc aaaaagatca 961 ttcattcagc cttgggaagt caatttgcag gctcctggat gagccctgcc ccgttttcac 1021 ttgccagcac atttcagtca tgtggtgtga tagccaaaga tgttttggac agagaagaaa 1081 ggatagaaaa accttctctt tggctaagtt ggtgtttggg gtggggatag gttagagtat 1141 agtacataac tatttgaaaa ataatgaaaa cacttttttc actcatgaaa tgagccactt 1201 agctcctaaa tagtgttttc ctgttagttt agaaagttgt ggacatattt ttttaatgat 1261 ttctgaccat ttttaatcac attgactcat ggaatggcct caaagcaccc cccagtgctt 1321 ctttcctcat tcccggtcat gggaactcag tattattaat agtcacaaca tgatttcaga 1381 actagatagc cctcccacac caagaagaat gtgagaggaa gtaaggtcac tttatgtaaa 1441 aaaaaaaaaa aacaaacgcg tacacatatg tatgtataca tacataccta tgtgcacaca 1501 cacacacata tacatacaca caaaatgcta tgaagagtta tctgtttagt agcctgttat 1561 agtcaaatca ttttaagttt caacttctta cagttgggcc acttgttgtc ctttgtggat 1621 ggatatctga aattgtgtct atatattgct agtcatgata ctgtgaacaa aaagggtagt 1681 gttagtattt gtcagggtgg taaggatgca ttccaggaag cttcctctga ggaagggaat 1741 gaggtcattc ttgccatgta tgaaagacat agatgttttc cagaaggcac cattgggagc 1801 cccagtataa gttcctttag actctacagt ttagagggat tttatatgtc ctaggactca 1861 ggactccaga actttgtggg ctcagctgct tcataccatg gggatacatt gacatgaaca 1921 attattttgg aatgtgtctt tagggacgac atcaaagttc tcaagtacct acaagacctg 1981 atactggaat gaaggtggac tttctttttt gcttccagtt cggatcaact ggaatgtatc 2041 tggggacctt gaagaacggc tgtccagctg tcttcaccat ttgtatagtg ctttgaatta 2101 ttcagaggtt ttaaagtcag gaagacctgg tttaaaaaac atttcattat gagttaaatg 2161 gcctcaggca agtcactgtt catccaagtc tatgactcct caactgtaag atggccacac 2221 tgaaacttgc taagatcctc tggcctctgc ctcccaagag ttgggatttc aggagtgcac 2281 aatcatgacc caaactcgtg ataatctctc agcttcaata actttccagc taattggaat 2341 atcctgtaat caaacatgag gcatttcccc tccccccact gtttttgtgt ataaagagat 2401 ctttaaactt tttttttaat atgaggggta agaaaagata ggaatctttt aattctagac 2461 agaagatatt gtgctttggt tttttttttt ttttaatggc ttctattctg tgcttttaat 2521 taaaccagag aaggccaaga ttagccctac ttgtgtgata aaagaatgct ggcccttgtg 2581 attgcagtca gcctcttgac acatagagtt cttgaatcta agttataaaa ttatatttga 2641 aaatgacaga gctggagaat ttatagaaag ggtcatagca aataacaaac catttttttt 2701 ttaaacggaa agatttggtc tttggcaatc aataactttg ttttctaact ggaaaaggag 2761 gtttactgga gatgaatcac acctgaaagt tttcatacct cctctgaaca caaccgaaac 2821 ataggtgtcc aaagcttttc gctctcggta tgaaccaaca ggcgggttaa aaacactggg 2881 tcagagtaaa gcttttgcag tttcagatgt agtgtgtatg aagaaaacta tgtcacttgc 2941 tgctattatt gtaagagtct aagaactaaa ggtgtgccta taatttctaa ttatgagctc 3001 acctatttgg taccgagcat gccaatttta aagagacccg gtgtacctta tagctacatc 3061 caatgataaa attaccacac tagcacatgc ctgtgtttaa actcgtgctt taatgttttt 3121 cttagggcag gtatgcaccc cctttgcagt gagttgggag agattttgaa aaagtgtatg 3181 acaaacattt ttaacacctt tggtttcctc tctctgtgtc tctttgtctc tgtctctctc 3241 tttctctcct gtgcatatgt ctcccctccc tcacttctct gtctcttcct ctctccctct 3301 ctctgtcttt ctctgtgtgt ctctctgtct ctgtgtatct ctctgtctgt ctctttctct 3361 gcagattttc aaaacgttgt ttttctatgg aagaaataca agctgtggtt ggtttgctac 3421 gagtcagtag cagtttatca gtaggccaat gttttatctc ttggagattt cagtctgggt 3481 ttacccaatg tattctctgt aatgtgactg ctggggacag atataacgag attgagcctt 3541 caaatcattt aggtcttcaa tcatttagtc aacggagtga gccactaatc tgcaatggct 3601 attttaatat gcatactgat ggtcaaatgg atgtctgatc tctcatccca gctttctgta 3661 ctaccatatg ggaactatat gtaacttgta tacttacctg aatatgttaa attcaactac 3721 atggtaagat ggaccagaaa ttgcaatgtt catgtccata tagccaccat taacccaagt 3781 taagcacagt agtgtgggtt ctctcaggac ttgtgaatga gtttatgctc tctacaaaga 3841 caggtgaagc ttaaatctct cttgcactgc tatgtttatg caaatatcaa gattgtttct 3901 gtaccaggga cttaacacat tctattcata ctattttccc tgtctacaat gttatttcat 3961 agatatctac ttggtttgct cttacttcct tgacatattt gcccaaatgc caccttcaac 4021 tgtagttaat tacctgtaca acctgtctcc atgccttgtt ttattttctc tataactcta 4081 ctaataggta tttttcttat ttattggttt attgcctgtt ttttttccta aatctacacc 4141 ggatctccaa agggaaagaa ctccatttgc tttgatttta ttgctgtatc cccagtgcct 4201 agaataatgc ttagcctgca ataaatattt attcattgac tg //