LOCUS AK016818 1761 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4933415F16 product:signaling lymphocyte activation
molecule, full insert sequence.
ACCESSION AK016818
VERSION AK016818.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1761)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4933415F16
FEATURES Location/Qualifiers
source 1..1761
/clone="4933415F16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4933415F16"
/db_xref="MGI:1897102"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
CDS <1..801
/codon_start=1
/note="putative"
/note="signaling lymphocyte activation molecule
(MGD|MGI:1351314 GB|NM_013730, evidence: BLASTN, 99%,
match=653)"
/note="start codon is not identified"
/protein_id="BAB30447.1"
/transl_table=1
/translation="EIVSFDLSKGSYPDHLEDGYHFQSKNLSLKILGNRRESEGWYLV
SVEENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGTCSLLLACTVKKGDHVTYSW
SDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPVSSISRTFNLSSQACKQESS
SESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHCQPPVEEKSLTIYAQVQKSG
PQEKKLHDALTDQDPCTTIYVAATEPAPESVQEPNPTTVYASVTLPES"
regulatory 1741..1746
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1761
/note="putative"
BASE COUNT 518 a 428 c 376 g 439 t
ORIGIN
1 gaaattgttt cttttgatct ctctaaaggg agctatccag atcacctgga ggatggctac
61 cactttcaat caaaaaacct gagcctgaag atcctcggga acaggcggga gagtgaagga
121 tggtacttgg tgagcgtgga ggagaacgtt tctgttcagc aattctgcaa gcagctgaag
181 ctttatgaac aggtctcccc tccagagatt aaagtgctaa acaaaaccca ggagaacgag
241 aatgggacct gcagcttgct gttggcctgc acagtgaaga aaggggacca tgtgacttac
301 agctggagtg atgaggcagg cacccacctg ctgagccgag ccaaccgctc ccacctcctg
361 cacatcactc ttagcaacca gcatcaagac agcatctaca actgcaccgc aagcaaccct
421 gtcagcagta tctctaggac cttcaaccta tcatcgcaag catgcaagca ggaatcctcc
481 tcagaatcga gtccatggat gcaatatact cttgtaccac tgggggtcgt tataatcttc
541 atcctggttt tcacggcaat aataatgatg aaaagacaag gtaaatcaaa tcactgccag
601 ccaccagtgg aagaaaaaag ccttactatt tatgcccaag tacagaaatc agggcctcaa
661 gagaagaaac ttcatgatgc cctaacagat caggacccct gcacaaccat ttatgtggct
721 gccacagagc ctgccccaga gtctgtccag gaaccaaacc ccaccacagt ttatgccagt
781 gtgacactgc cagagagctg acccatatac ccagtgaaag gactttttga aggaggatag
841 aagaaccaaa atccacactg aactggaccc cgggtcccaa gttctctgtg acagaaactg
901 cacatctgta accttctcca atcagttccc tggtgacgga tctgcacagg cgtgcttatg
961 aagtagatga gaagtgaggc ttcctgggca tgcaacctgc tctgctgctg acacagatat
1021 gaagcagaga tcccgtggta cagtgtacca tctttgctgt agcagataat gtgggtttag
1081 gcatctcact ctttgctgga ctggataaca gaactcaaaa aaaaaccaac aagccaaaga
1141 catagactcc atctcagatg gctgagcaca aagtataaaa gccattttgg ctctctggac
1201 tttattctgg aagctgatcc tgatcacctc aaggccaagg gctccatgcc tcagtttctc
1261 tctcaccctc tagatgaaga gggaacaaag cataaagagt gaaatccttg ttgtctgaga
1321 tcattctata aacgaactga cattttattt gcaaaactca agctagtaat tcagtagact
1381 tgaagatgat tttagagcct cttatgcttc aaacaacaga atgaaatcca tccaatgttc
1441 ttcaaagtgt ggttctctga ttaagtcaaa gcaacactgt ttggcaatgc tgctgtaaag
1501 ttgcctggaa tactcagagg aacttgtccc agggaggttt ttttcacttc ttcaaagaac
1561 ttttgaattt aagttctctg tttattccct tgagcaaaac tctggaacct caagagtctc
1621 tctccgttgg ttctgaggcc attttatagc ctaggcctcc tgtggatcta catgtgtatc
1681 acccacttcc tatctcactg catacctctg tgtagtagta aatttaacct caagtagaaa
1741 attaaattat tttggatgac c
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