LOCUS AK007741 1143 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
enriched library, clone:1810041B03 product:CD48 antigen, full
insert sequence.
ACCESSION AK007741
VERSION AK007741.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1143)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1810041B03
FEATURES Location/Qualifiers
source 1..1143
/clone="1810041B03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1810041B03"
/db_xref="MGI:1910300"
/db_xref="taxon:10090"
/dev_stage="10 day old"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="pancreas"
CDS 41..763
/codon_start=1
/note="CD48 antigen (MGD|MGI:88339)"
/note="putative"
/protein_id="BAB25228.1"
/transl_table=1
/translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIH
KDPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKED
KGTYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDY
TWYESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSS
GVCWTATWLVVTTLIIHRILLT"
BASE COUNT 349 a 257 c 220 g 317 t
ORIGIN
1 gagttgtctc cagtgttctg gggaagcttc tccaagtatt atgtgcttca taaaacaggg
61 atggtgtctg gtcctggaac tgctactgct gcccttggga actggatttc aaggtcattc
121 aataccagat ataaatgcca ccaccggcag caatgtaacc ctgaaaatcc ataaggaccc
181 acttggacca tataaacgta tcacctggct tcatactaaa aatcagaaga ttttagagta
241 caactataat agtacaaaga caatcttcga gtctgaattt aaaggcaggg tttatcttga
301 agaaaacaat ggtgcacttc atatctctaa tgtccggaaa gaggacaaag gtacctacta
361 catgagagtg ctgcgtgaaa ctgagaacga gttgaagata accctggaag tatttgatcc
421 tgtgcccaag ccttccatag aaatcaataa gactgaagcg tcgactgatt cctgtcacct
481 gaggctatcg tgtgaggtaa aggaccagca tgttgactat acttggtatg agagctcggg
541 acctttcccc aaaaagagtc caggatatgt gctcgatctc atcgtcacac cacagaacaa
601 gtctacattt tacacctgcc aagtcagcaa tcctgtaagc agcaagaacg acacagtgta
661 cttcactcta ccttgtgatc tagccagatc ttctggagta tgttggactg caacttggct
721 agtggtcaca acactcatca ttcacaggat cctgttaacc tgacaagaac tcttctcacc
781 caagaaggca acttggaagc acagagtctt gccttcatcc ctagcagtgt tcctagccag
841 cgaagcaact ctggctctat tggacaaagg aaaatgtgtt actgaacgtc tgcgagagtt
901 tgcatgcatg gtctatgaaa caagcacagg accttgtaca gtgctccacc actgacctgt
961 gtgcccagtc ctttacaaag atttcaaatc acccttttaa aaactgtgca taatatctaa
1021 ttttatatac cctagttgtt tcccaacata tattaaagat aaatgcattc tttttaccaa
1081 aatgtgacta tattattttc atgttttcat atctcttttt aaaataaatt cttttaaaaa
1141 act
//