LOCUS AJ717477 1124 bp DNA linear BCT 26-JUL-2005
DEFINITION Pseudomonas agarici partial rpoB gene for DNA-directed RNA
polymerase beta chain, strain LMG 2112T.
ACCESSION AJ717477
VERSION AJ717477.1
KEYWORDS DNA-directed RNA polymerase beta chain; rpoB gene.
SOURCE Pseudomonas agarici
ORGANISM Pseudomonas agarici
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 1124)
AUTHORS Grimont P.A.D.
JOURNAL Submitted (25-MAY-2004) to the INSDC. Grimont P.A.D., Biodiversity
Emerging Pathogenic Bact., Institut Pasteur, 28 rue du Dr Roux
75724 Paris Cedex 15, 75724, FRANCE.
REFERENCE 2
AUTHORS Ait Tayeb L., Ageron-Ardila E., Grimont F., Grimont P.A.D.
TITLE Molecular phylogeny of the genus Pseudomonas based on rpoB
sequences and application for the identification of isolates
JOURNAL Res. Microbiol. 156(5-6), 763-773(2005).
PUBMED 15950132
FEATURES Location/Qualifiers
source 1..1124
/organism="Pseudomonas agarici"
/strain="type strain: LMG 2112"
/mol_type="genomic DNA"
/db_xref="taxon:46677"
CDS <1..>1124
/codon_start=1
/transl_table=11
/gene="rpoB"
/product="DNA-directed RNA polymerase beta chain"
/EC_number="2.7.7.6"
/db_xref="GOA:Q5ZMZ0"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR014724"
/db_xref="InterPro:IPR015712"
/db_xref="InterPro:IPR019462"
/db_xref="InterPro:IPR037033"
/db_xref="InterPro:IPR042107"
/db_xref="UniProtKB/TrEMBL:Q5ZMZ0"
/protein_id="CAG30649.1"
/translation="MAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEI
THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTN
QYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKKILTDELVAVRHLN
EFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKP
LVGTGMERNVARDSGVCVVAPRGGVIDSVDASRIVVRVADDEVEPGEAGVDIYNLTKY
TRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFED
SICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIFRGHP"
BASE COUNT 226 a 348 c 339 g 211 t
ORIGIN
1 atggctgaaa gcgaaggcct gatgccgcaa gacctgatca acgccaagcc agtggctgcg
61 gcggtgaagg agttcttcgg ttcgagccag ctgtcgcagt tcatggacca gaacaacccg
121 ttgtccgaga tcactcacaa gcgtcgcgtc tccgcgcttg gcccgggcgg tctgacccgt
181 gagcgcgcag gcttcgaagt gcgtgacgta cacccgacgc actacggtcg cgtgtgtccg
241 atcgaaacgc ctgaaggtcc gaacatcggt ctgatcaact ccctggccgc ctatgcgcgc
301 accaaccagt acggtttcct tgaaagcccg taccgtgtgg tgaaagacgc tctggtgacc
361 gacgagatcg tgttcctgtc cgccatcgag gaagccgatc acgtgatcgc ccaggcttcg
421 gccacgatga acgacaagaa gatcctcact gacgagctgg tggcggttcg tcacctgaac
481 gagttcaccg tcaaggcgcc ggaagacgtc accctgatgg acgtatcgcc caagcaggtt
541 gtttcggtcg ccgcgtcgct gatcccgttc ctcgagcacg acgacgccaa ccgtgcgttg
601 atgggttcga acatgcagcg ccaggctgta ccgaccctgc gagccgacaa gccgctggtg
661 ggtaccggca tggagcgcaa cgttgcccgt gactccggcg tgtgcgtcgt ggctccccgt
721 ggcggggtga tcgattcggt cgatgccagt cgtatcgtgg ttcgcgttgc cgatgacgaa
781 gttgagccgg gcgaagccgg tgtcgacatc tataacctga ccaaatacac ccgttcgaac
841 cagaacacct gcatcaacca gcgtccgctg gtgagcaagg gtgatcgcgt tcagcgcagc
901 gacatcatgg ccgacggccc gtccaccgac atgggtgagc tggcgctggg tcagaacatg
961 cgcatcgcct tcatggcgtg gaacggcttc aacttcgaag actccatctg cctgtcggaa
1021 cgcgttgtcc aggaagatcg cttcaccacg atccacattc aggaactgac ctgtgtggcc
1081 cgtgacacca agcttggccc agaggaaatc ttccgcggac atcc
//