LOCUS AJ717440 1142 bp DNA linear BCT 26-JUL-2005
DEFINITION Pseudomonas mendocina partial rpoB gene for DNA-directed RNA
polymerase beta chain, strain LMG 1223T.
ACCESSION AJ717440
VERSION AJ717440.1
KEYWORDS DNA-directed RNA polymerase beta chain; rpoB gene.
SOURCE Pseudomonas mendocina
ORGANISM Pseudomonas mendocina
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 1142)
AUTHORS Grimont P.A.D.
JOURNAL Submitted (25-MAY-2004) to the INSDC. Grimont P.A.D., Biodiversity
Emerging Pathogenic Bact., Institut Pasteur, 28 rue du Dr Roux
75724 Paris Cedex 15, 75724, FRANCE.
REFERENCE 2
AUTHORS Ait Tayeb L., Ageron-Ardila E., Grimont F., Grimont P.A.D.
TITLE Molecular phylogeny of the genus Pseudomonas based on rpoB
sequences and application for the identification of isolates
JOURNAL Res. Microbiol. 156(5-6), 763-773(2005).
PUBMED 15950132
FEATURES Location/Qualifiers
source 1..1142
/organism="Pseudomonas mendocina"
/strain="type strain: LMG 1223"
/mol_type="genomic DNA"
/db_xref="taxon:300"
CDS <1..>1142
/codon_start=1
/transl_table=11
/gene="rpoB"
/product="DNA-directed RNA polymerase beta chain"
/EC_number="2.7.7.6"
/db_xref="GOA:Q5ZN27"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR014724"
/db_xref="InterPro:IPR015712"
/db_xref="InterPro:IPR037033"
/db_xref="InterPro:IPR042107"
/db_xref="UniProtKB/TrEMBL:Q5ZN27"
/protein_id="CAG30612.1"
/translation="TRGQGTPVDGRKRRPDAAGPDQRQAGCGGGEGVLRFQPALAVHG
PEQPALRDHPQAPRLRTRPGRSDPGARRLRSPRRTPDPLRPCVPDRNPGRSEHRSDQL
AGCLCPHQPVWLPGKPVPRGQGRSGHRRDRVPVRHRRSRSRDRSGVRDPERQEGQLID
ELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQA
VPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAG
VDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMRVAFM
PWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEISS"
BASE COUNT 231 a 370 c 338 g 203 t
ORIGIN
1 acgcgcggtc aaggaacgcc tgtcgatggc cgaaagcgaa ggcctgatgc cgcaggacct
61 gatcaacgcc aagccggttg cggcggcggt gaaggagttc ttcggttcca gccagctctc
121 gcagttcatg gaccagaaca acccgctctc cgagatcacc cacaagcgcc gcgtctccgc
181 actcggcccg ggcggtctga cccgggagcg cgccggcttc gaagtccgcg acgtacaccc
241 gacccactac ggccgtgtgt gcccgatcga aaccccggaa ggtccgaaca tcggtctgat
301 caactcgctg gctgcctatg cccgcaccaa ccagtatggc ttcctggaaa gcccgtaccg
361 cgtggtcaag gaaggtcagg tcaccgacga gatcgtgttc ctgtccgcca tcgaagaagc
421 cgatcacgtg atcgctcagg cgtccgcgac cctgaacgac aagagggtca gctgatcgac
481 gagctggtcg ccgtacgtca cctgaacgaa ttcaccgtca aggcgccgga agacgtcacc
541 ctgatggacg tttcgccgaa gcaggtagtc tcggttgccg cctcgctgat tccgttcctc
601 gagcacgacg acgccaaccg tgcactcatg ggttcgaaca tgcagcgtca ggctgtaccg
661 accctgcgcg ctgacaagcc gctggtaggt accggcatgg agcgcaacgt cgcccgtgac
721 tctggcgtct gcgtcgtggc tcgtcgtggt ggtgtgatcg attccgttga tgccagccgc
781 atcgtggttc gtgtcaatga tgacgaagtc gaaactggcg aagccggtgt cgacatctac
841 aacctgacca agtacacccg ctccaaccag aacacctgca tcaaccagcg cccgctggtg
901 agcaagggtg atcaggtatc gcgtggcgac atcatggctg acggcccgtc cactgacatg
961 ggtgaactgg cgctgggtca gaacatgcgc gtggcgttca tgccgtggaa cggcttcaac
1021 ttcgaagact ccatctgcct gtccgagcgc gtggttcagg aagaccgctt caccaccatc
1081 cacatccagg agctcacctg tgtggcgcgt gacaccaagc tcggcccaga ggaaatctcc
1141 tc
//