LOCUS       AJ717426                1166 bp    DNA     linear   BCT 26-JUL-2005
DEFINITION  Pseudomonas chlororaphis partial rpoB gene for DNA-directed RNA
            polymerase beta chain, strain LMG 1245T.
ACCESSION   AJ717426
VERSION     AJ717426.1
KEYWORDS    DNA-directed RNA polymerase beta chain; rpoB gene.
SOURCE      Pseudomonas chlororaphis subsp. chlororaphis
  ORGANISM  Pseudomonas chlororaphis subsp. chlororaphis
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Grimont P.A.D.
  JOURNAL   Submitted (25-MAY-2004) to the INSDC. Grimont P.A.D., Biodiversity
            Emerging Pathogenic Bact., Institut Pasteur, 28 rue du Dr Roux
            75724 Paris Cedex 15, 75724, FRANCE.
REFERENCE   2
  AUTHORS   Ait Tayeb L., Ageron-Ardila E., Grimont F., Grimont P.A.D.
  TITLE     Molecular phylogeny of the genus Pseudomonas based on rpoB
            sequences and application for the identification of isolates
  JOURNAL   Res. Microbiol. 156(5-6), 763-773(2005).
   PUBMED   15950132
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Pseudomonas chlororaphis subsp. chlororaphis"
                     /strain="type strain: LMG 1245"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:333"
     CDS             <1..>1166
                     /codon_start=1
                     /transl_table=11
                     /gene="rpoB"
                     /product="DNA-directed RNA polymerase beta chain"
                     /EC_number="2.7.7.6"
                     /db_xref="GOA:Q5ZN41"
                     /db_xref="InterPro:IPR007120"
                     /db_xref="InterPro:IPR007645"
                     /db_xref="InterPro:IPR015712"
                     /db_xref="InterPro:IPR019462"
                     /db_xref="InterPro:IPR037033"
                     /db_xref="UniProtKB/TrEMBL:Q5ZN41"
                     /protein_id="CAG30598.1"
                     /translation="VRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLS
                     QFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG
                     LINSLAAYARTNQYGFLESPYRVVKEGLVTDEIVFLSAIEEADHVIAQASATMNDKGQ
                     LIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQ
                     RQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVEPG
                     EAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRI
                     AFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNV"
BASE COUNT          244 a          352 c          348 g          222 t
ORIGIN      
        1 gtgcgtgtag agcgcgcggt caaagagcgt ctgtcgatgg ctgaaagcga aggcctgatg
       61 ccgcaagacc tgatcaacgc caagccagtg gcggcggcgg tgaaggagtt cttcggttcc
      121 agccagctgt cccagttcat ggaccagaac aacccgctgt ccgagatcac ccacaagcgc
      181 cgtgtctctg cactcggccc aggcggcctg actcgtgagc gtgcaggctt cgaagttcgt
      241 gacgtacacc cgactcacta cggtcgtgta tgcccgatcg agacgccgga aggtccgaac
      301 atcggtctga tcaactccct ggccgcctat gctcgcacca accagtacgg cttcctcgag
      361 agcccgtacc gtgtggtgaa agaaggtctg gtgaccgacg aaatcgtgtt cctgtccgct
      421 atcgaagagg ccgatcacgt gatcgcccag gcttcggcga ccatgaacga caaaggtcag
      481 ctgatcgacg agctggtagc tgttcgtcac ctgaacgaat tcaccgtcaa ggcgccagaa
      541 gacgtcacct tgatggacgt ttcgccgaag caggtagttt cggttgcggc gtcgctgatt
      601 ccgttcctcg agcacgacga cgccaaccgt gcgttgatgg ggtcgaacat gcagcgtcag
      661 gctgtaccaa ccctgcgtgc cgacaagccg ctggtaggta ccggcatgga gcgtaacgtt
      721 gcccgtgact ccggcgtttg cgtcgtggct cgtcgtggcg gcgtgatcga ctcggttgat
      781 gccagccgta tcgtggttcg tgttgcagat gacgaagttg agccaggcga agccggtgtc
      841 gacatctaca acctgaccaa atacacccgc tccaaccaga acacctgcat caaccagcgt
      901 ccgctggtga gcaagggcga tcgggttcag cgcagcgaca tcatggccga cggtccgtcc
      961 accgacatgg gtgaactggc tctgggtcag aacatgcgca tcgcgttcat ggcatggaac
     1021 ggcttcaact tcgaagactc catctgcctg tccgagcgtg tggtccagga agaccgcttc
     1081 accacgatcc acatccagga actgacctgt gtggcccgtg acaccaagct tggcccagag
     1141 gaaatcactg cggacatccc gaacgt
//