LOCUS AJ717426 1166 bp DNA linear BCT 26-JUL-2005 DEFINITION Pseudomonas chlororaphis partial rpoB gene for DNA-directed RNA polymerase beta chain, strain LMG 1245T. ACCESSION AJ717426 VERSION AJ717426.1 KEYWORDS DNA-directed RNA polymerase beta chain; rpoB gene. SOURCE Pseudomonas chlororaphis subsp. chlororaphis ORGANISM Pseudomonas chlororaphis subsp. chlororaphis Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 1166) AUTHORS Grimont P.A.D. JOURNAL Submitted (25-MAY-2004) to the INSDC. Grimont P.A.D., Biodiversity Emerging Pathogenic Bact., Institut Pasteur, 28 rue du Dr Roux 75724 Paris Cedex 15, 75724, FRANCE. REFERENCE 2 AUTHORS Ait Tayeb L., Ageron-Ardila E., Grimont F., Grimont P.A.D. TITLE Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates JOURNAL Res. Microbiol. 156(5-6), 763-773(2005). PUBMED 15950132 FEATURES Location/Qualifiers source 1..1166 /organism="Pseudomonas chlororaphis subsp. chlororaphis" /strain="type strain: LMG 1245" /mol_type="genomic DNA" /db_xref="taxon:333" CDS <1..>1166 /codon_start=1 /transl_table=11 /gene="rpoB" /product="DNA-directed RNA polymerase beta chain" /EC_number="2.7.7.6" /db_xref="GOA:Q5ZN41" /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR015712" /db_xref="InterPro:IPR019462" /db_xref="InterPro:IPR037033" /db_xref="UniProtKB/TrEMBL:Q5ZN41" /protein_id="CAG30598.1" /translation="VRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLS QFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG LINSLAAYARTNQYGFLESPYRVVKEGLVTDEIVFLSAIEEADHVIAQASATMNDKGQ LIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQ RQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVEPG EAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRI AFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNV" BASE COUNT 244 a 352 c 348 g 222 t ORIGIN 1 gtgcgtgtag agcgcgcggt caaagagcgt ctgtcgatgg ctgaaagcga aggcctgatg 61 ccgcaagacc tgatcaacgc caagccagtg gcggcggcgg tgaaggagtt cttcggttcc 121 agccagctgt cccagttcat ggaccagaac aacccgctgt ccgagatcac ccacaagcgc 181 cgtgtctctg cactcggccc aggcggcctg actcgtgagc gtgcaggctt cgaagttcgt 241 gacgtacacc cgactcacta cggtcgtgta tgcccgatcg agacgccgga aggtccgaac 301 atcggtctga tcaactccct ggccgcctat gctcgcacca accagtacgg cttcctcgag 361 agcccgtacc gtgtggtgaa agaaggtctg gtgaccgacg aaatcgtgtt cctgtccgct 421 atcgaagagg ccgatcacgt gatcgcccag gcttcggcga ccatgaacga caaaggtcag 481 ctgatcgacg agctggtagc tgttcgtcac ctgaacgaat tcaccgtcaa ggcgccagaa 541 gacgtcacct tgatggacgt ttcgccgaag caggtagttt cggttgcggc gtcgctgatt 601 ccgttcctcg agcacgacga cgccaaccgt gcgttgatgg ggtcgaacat gcagcgtcag 661 gctgtaccaa ccctgcgtgc cgacaagccg ctggtaggta ccggcatgga gcgtaacgtt 721 gcccgtgact ccggcgtttg cgtcgtggct cgtcgtggcg gcgtgatcga ctcggttgat 781 gccagccgta tcgtggttcg tgttgcagat gacgaagttg agccaggcga agccggtgtc 841 gacatctaca acctgaccaa atacacccgc tccaaccaga acacctgcat caaccagcgt 901 ccgctggtga gcaagggcga tcgggttcag cgcagcgaca tcatggccga cggtccgtcc 961 accgacatgg gtgaactggc tctgggtcag aacatgcgca tcgcgttcat ggcatggaac 1021 ggcttcaact tcgaagactc catctgcctg tccgagcgtg tggtccagga agaccgcttc 1081 accacgatcc acatccagga actgacctgt gtggcccgtg acaccaagct tggcccagag 1141 gaaatcactg cggacatccc gaacgt //