LOCUS AJ717418 1187 bp DNA linear BCT 26-JUL-2005
DEFINITION Pseudomonas cichorii partial rpoB gene for DNA-directed RNA
polymerase beta chain, strain LMG 2162T.
ACCESSION AJ717418
VERSION AJ717418.1
KEYWORDS DNA-directed RNA polymerase beta chain; rpoB gene.
SOURCE Pseudomonas cichorii
ORGANISM Pseudomonas cichorii
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 1187)
AUTHORS Grimont P.A.D.
JOURNAL Submitted (25-MAY-2004) to the INSDC. Grimont P.A.D., Biodiversity
Emerging Pathogenic Bact., Institut Pasteur, 28 rue du Dr Roux
75724 Paris Cedex 15, 75724, FRANCE.
REFERENCE 2
AUTHORS Ait Tayeb L., Ageron-Ardila E., Grimont F., Grimont P.A.D.
TITLE Molecular phylogeny of the genus Pseudomonas based on rpoB
sequences and application for the identification of isolates
JOURNAL Res. Microbiol. 156(5-6), 763-773(2005).
PUBMED 15950132
FEATURES Location/Qualifiers
source 1..1187
/organism="Pseudomonas cichorii"
/strain="type strain: LMG 2162"
/mol_type="genomic DNA"
/db_xref="taxon:36746"
CDS <1..>1187
/codon_start=1
/transl_table=11
/gene="rpoB"
/product="DNA-directed RNA polymerase beta chain"
/EC_number="2.7.7.6"
/db_xref="GOA:Q5ZN49"
/db_xref="InterPro:IPR007120"
/db_xref="InterPro:IPR007645"
/db_xref="InterPro:IPR014724"
/db_xref="InterPro:IPR015712"
/db_xref="InterPro:IPR019462"
/db_xref="InterPro:IPR037033"
/db_xref="InterPro:IPR042107"
/db_xref="UniProtKB/TrEMBL:Q5ZN49"
/protein_id="CAG30590.1"
/translation="LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI
GLINSLAAYARTNQYGFLESPYRVVKEGLVTDEIVFLSAIEEADHVIAQASAAMNDKQ
ELIDELVAVRHLNEFTVKAPADVTLMDGRFAQAGSFGRSFPDSVPRARRRQPCVDGFR
TCSVRLYQPCVPTSRWSVPAWSATLPVTPAFASWLVVAVLIDSVDASRIVVRVADDEV
ETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQN
MRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNV
GEAV"
BASE COUNT 249 a 344 c 341 g 253 t
ORIGIN
1 ctggtccgcg tagagcgtgc tgtaaaagaa cgtctgtcca tggcagaaag cgaaggcctg
61 atgcctcagg acctgatcaa cgccaagcct gtcgcagcgg cagtcaagga gttcttcggt
121 tccagccagc tttcccagtt catggaccag aacaacccgc tgtccgagat tacccacaag
181 cgtcgtgttt ctgcactcgg ccctggtggt ctgactcgtg agcgcgccgg ctttgaagtc
241 cgtgacgtac acccgactca ctacggtcgt gtatgcccga ttgaaacgcc ggaaggtccg
301 aacatcggtc tgatcaactc cttggcggcc tatgcccgta ccaaccagta tggtttcctc
361 gagagcccgt accgcgttgt caaggaaggc ctggtaaccg acgaaatcgt tttcctttcg
421 gcaatcgaag aggcggacca cgtcattgca caggcttcgg ccgcaatgaa cgacaagcag
481 gaactgatcg acgagctggt agccgttcgt cacctgaacg aatttaccgt caaggctcct
541 gccgacgtaa cccttatgga tggacgtttc gcccaagcag gtagtttcgg tcgcagcttc
601 cctgattccg ttcctcgagc acgacgacgc caaccgtgcg ttgatgggtt tcgaacatgc
661 agcgtcaggc tgtaccaacc ctgcgtgccg acaagccgct ggtcggtacc ggcatggagc
721 gcaacgttgc ccgtgactcc ggcgtttgcg tcgtggctcg tcgtggcggt gttgatcgac
781 tcggtcgatg caagccgtat cgttgtgcgt gttgccgatg acgaagttga aacgggcgag
841 gcgggtgtag atatctacaa cctgaccaag tacacccgtt cgaaccagaa cacctgcatc
901 aaccagcgtc cgctggtgag caagggtgat cgcgttcagc gcagcgacat catggctgac
961 ggtccgtcca ccgacatggg tgaactggct ctgggtcaga acatgcgcat cgcgttcatg
1021 gcctggaacg gtttcaactt cgaagactcc atctgtctgt ccgagcgtgt ggttcaggaa
1081 gatcgtttca ccacgatcca tatccaggaa ctgacttgcg ttgctcgtga caccaagctt
1141 ggcccagagg aaatcacggc tgacatcccg aacgtgggtg aagcggt
//