LOCUS AB209136 6694 bp mRNA linear HUM 17-NOV-2007
DEFINITION Homo sapiens mRNA for Down syndrome cell adhesion molecule isoform
CHD2-42 precursor variant protein.
ACCESSION AB209136
VERSION AB209136.1
KEYWORDS FLI_CDNA.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6694)
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2005) to the DDBJ/EMBL/GenBank databases.
Contact:Osamu Ohara
Kazusa DNA Research Institute, Department of Human Gene Research;
2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
URL :http://protein.gsc.riken.go.jp/
REFERENCE 2
AUTHORS Totoki,Y., Toyoda,A., Takeda,T., Sakaki,Y., Tanaka,A.,
Yokoyama,S., Ohara,O., Nagase,T. and Kikuno,R.F.
TITLE Homo sapiens protein coding cDNA
JOURNAL Published Only in Database(2005)
COMMENT This work was supported in part by the National Project on Protein
Structural and Functional Analysis , Ministry of Education,
Culture , Sports, Science and Technology of Japan.
Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S.
RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi,
Yokohama 230-0045, Japan.
URL: http://protein.gsc.riken.go.jp/
FEATURES Location/Qualifiers
source 1..6694
/clone="fg03766"
/db_xref="H-InvDB:HIT000329071"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="this clone is also named as hsk003000816"
/note="vector:pBluescriptII SK plus"
/organism="Homo sapiens"
/tissue_type="brain"
CDS <1..6074
/codon_start=3
/inference="non-experimental evidence, no additional
details recorded"
/note="Start codon is not identified."
/product="Down syndrome cell adhesion molecule isoform
CHD2-42 precursor variant"
/protein_id="BAD92373.1"
/translation="VARGRPGSGRGMWILALSLFQSFANVFSEDLHSSLYFVNASLQE
VVFASTTGTLVPCPAAGIPPVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSF
STLIHDNTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVEDQKTMRGNVAVFKCIIPS
SVEAYITVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGET
RQSNSARLFVSDPANSAPSILDGFEHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPL
ELSGRFQKTVTGLLIENIRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKV
KSSVGSQVSLSCSVTGTEDQELSWYRNGEILNPGKNVRITGINHENLIMDHMVKSDGG
AYQCFVRKDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTIT
WTLDDDPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQA
RINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFEN
NGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRV
FIPCVVVSGDLPITITWQKDGRPIPGSLGVTIDNIDFTSSLRISNLSLMHNGNYTCIA
RNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGA
GVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIP
AMITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEE
VISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITL
RWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMY
AKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRG
YQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQ
EIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDG
ELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPA
GVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNL
SRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKDIVLPCKA
VGDPSPAVKWMKDSNGTPSLVTIDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGS
DEIILNLQVQVPPDQPRLTVSKTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQWG
SFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRISEIIEAKTLGKEPQFSKEQEL
FASINTTRVRLNLIGWNDGGCPITSFTLEYRPFGTTVWTTAQRTSLSKSYILYDLQEA
TWYELQMRVCNSAGCAEKQANFATLNYDGSTIPPLIKSVVQNEEGLTTNEGLKMLVTI
SCILVGVLLLFVLLLVVRRRRREQRLKRLRDAKSLAEMLMSKNTRTSDTLSKQQQTLR
MHIDIPRAQLLIEERDTMETIDDRSTVLLTDADFGEAAKQKSLTVTHTVHYQSVSQAT
GPLVDVSDARPGTNPTTRRNAKAGPTARNRYASQWTLNRPHPTISAHTLTTDWRLPTP
RAAGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAK
FTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPPKPQDGGRVMNMAV
PKAHRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQKSRTLKRPTVLEPIP
MEAASSASSTREGQSWQPGAVATLPQREGAELGQAAKMSSSQESLLDSRGHLKGNNPY
AKSYTLV"
BASE COUNT 1776 a 1764 c 1693 g 1461 t
ORIGIN
1 gcgtcgctcg cgggaggccg gggagcggca ggggcatgtg gatactggct ctctccttgt
61 tccagagctt cgcgaatgtt ttcagtgaag acctacactc cagcctctac tttgtcaatg
121 catctctgca agaggtagtg tttgccagca ccacggggac tctggtgccc tgccccgcag
181 caggcatccc tcctgtgact ctcagatggt acctagccac gggcgaggag atctacgatg
241 tccccgggat ccgccacgtc caccccaacg gcactctcca aattttcccc ttccctcctt
301 caagcttcag taccttaatc catgataata cttattattg cacagctgaa aatccttcag
361 ggaaaattag aagtcaggat gtccacatca aggctgtttt acgggagccc tatacagtcc
421 gtgtggagga ccagaaaacc atgagaggca atgttgcggt cttcaagtgc attatcccct
481 cctcggtgga ggcgtacatc actgtcgtct catgggagaa agacactgtt tcacttgtct
541 caggatctag atttctcatc acatccacgg gagccttgta tattaaagat gtacagaatg
601 aagatggatt gtataactac cgctgcatca cgcggcatcg atacaccgga gagacgaggc
661 agagcaacag cgccagactt tttgtatcag acccagcgaa ctcagcccca tccatactgg
721 atgggtttga gcatcgcaaa gccatggctg ggcagcgtgt ggagctgcct tgcaaagcgc
781 tcgggcaccc tgagccagat taccgctggc tgaaggacaa catgcccctg gaactttcag
841 ggaggttcca gaagaccgtg acggggctgc tcattgagaa cattcgcccc tcggactcag
901 gcagctatgt ttgtgaagtg tccaacagat acggaactgc taaggtgata ggccgcctgt
961 acgtgaaaca gccactgaaa gccaccatca gtcccaggaa ggttaaaagc agcgtgggta
1021 gccaagtttc cttgtcctgc agcgtgacag gaactgagga ccaggaactc tcctggtacc
1081 gcaatggtga aatcctcaac cctggaaaaa atgtgaggat cacagggatc aaccacgaaa
1141 accttataat ggatcacatg gtcaaaagtg acgggggcgc ataccagtgc tttgtgcgca
1201 aggacaagct gtccgctcaa gactatgtgc aggtggtcct tgaagatgga actcccaaaa
1261 ttatttctgc ctttagtgaa aaggtggtga gtccagcaga gccggtttcc cttatgtgca
1321 acgtgaaggg aacacctttg cccacgatca cgtggaccct ggacgatgac ccgattctca
1381 agggtggcag tcaccgcatc agccagatga tcacgtcgga ggggaacgtg gtcagctacc
1441 tgaacatctc cagctcccag gtccgggacg ggggagtcta ccgctgcact gccaacaact
1501 cggcgggagt cgtcctgtac caggctcgaa taaacgtaag agggcctgca agcattcgac
1561 caatgaaaaa catcacagca atagcaggac gggacacata cattcactgt cgtgtgattg
1621 gctatccgta ttactccatt aaatggtaca agaactctaa cctgcttcct ttcaaccacc
1681 gccaagtggc atttgagaac aatggaactc ttaaactttc agatgtgcaa aaggaagtgg
1741 acgaggggga gtacacgtgc aacgtgttgg ttcaaccaca actctccacc agccagagcg
1801 tccacgtgac cgtgaaagtt ccgcctttca tacaaccctt tgagtttcca agattctcca
1861 ttgggcagcg ggtcttcatc ccctgtgttg tggtctcagg ggacttaccc atcacgatca
1921 cctggcagaa ggatggccgg ccaatccctg ggagccttgg ggtgaccatt gacaatattg
1981 acttcacgag ctccttgagg atttccaatc tctcgctcat gcacaatggg aattacacct
2041 gcatagcccg gaatgaggcc gccgctgtgg agcaccaaag ccagttgatt gtcagagttc
2101 ctcccaagtt tgtggttcag ccacgggacc aggacgggat ttatggcaaa gcagtcatcc
2161 tcaattgttc tgctgagggt taccctgtac ctaccatcgt gtggaaattc tctaaaggtg
2221 ctggggttcc ccagttccag ccaattgccc taaatggccg aatccaagtt ctcagcaatg
2281 ggtcgttgct gatcaagcat gtcgtggagg aagacagtgg ctactacctc tgcaaggtca
2341 gcaacgatgt gggcgcagac gtcagcaagt ccatgtacct cacggttaaa attcctgcga
2401 tgataacatc ctatccaaat actaccctgg ccacgcaggg gcagaaaaag gagatgagct
2461 gcacggcgca tggtgagaag cccattatag tccgctggga gaaggaggac cgaatcatta
2521 accctgagat ggcccgttat cttgtgtcca ccaaggaggt gggagaagag gtgatttcta
2581 ctctgcagat tttgccaact gtgagagaag attctggttt cttttcctgc catgctatta
2641 attcttatgg ggaggaccgt ggaataattc agctcacagt gcaagagccc ccagaccctc
2701 ccgaaattga gatcaaagat gtcaaagcac gcacaattac gctcaggtgg accatggggt
2761 ttgatggaaa cagtcccatc acaggctacg atattgaatg caaaaataaa tcagactcct
2821 gggattctgc tcagagaacc aaagatgttt cccctcagct gaactcggcc accatcattg
2881 atatccaccc ttcctccacc tacagcatcc gcatgtacgc caagaaccgg attggcaaga
2941 gcgagcccag caacgagctc accatcacgg cggacgaggc agctcctgat ggtccacctc
3001 aggaagttca cctggagcct atatcatctc agagcatcag ggtcacatgg aaggctccca
3061 agaaacattt gcaaaatggg attatccgtg gctaccaaat aggttaccga gagtacagca
3121 ctgggggtaa cttccaattc aacattatca gtgtcgacac cagcggggac agtgaggttt
3181 acaccctgga caacctgaat aagttcactc agtacggcct ggtggtgcag gcctgtaacc
3241 gggccggcac ggggccttct tctcaggaaa tcatcaccac cactctcgag gatgtgccca
3301 gttacccccc cgaaaatgtc caagccatag caacatcacc agaaagcata tcaatatcct
3361 ggtccacact ttccaaggaa gccttgaatg gaattctcca ggggttcaga gtcatttact
3421 gggccaacct catggacgga gagctgggtg agattaaaaa catcaccacc acacagcctt
3481 cactggagct ggacgggctg gaaaagtaca ccaactacag catccaggtg ctggccttca
3541 cccgcgcagg agacggggtc aggagtgagc agatcttcac ccggaccaaa gaggatgttc
3601 caggtcctcc cgcgggtgtg aaggcagcgg cggcctcagc ctccatggtc tttgtgtcct
3661 ggcttccccc tctcaagctg aacggcatca tccgaaagta cactgtattc tgctcccacc
3721 cctatcccac agtgatcagc gagtttgagg cctctcccga ctcgttttcc tacagaattc
3781 ccaacctgag taggaatcgt cagtacagcg tctgggtggt ggctgttact tcagccggaa
3841 gaggcaacag cagtgaaatc atcacagttg agccactagc aaaagctcct gcacgaatcc
3901 tgaccttcag tgggacagtg actactccat ggatgaaaga cattgtcttg ccttgtaagg
3961 ctgttgggga cccttctcct gcagtcaaat ggatgaaaga cagtaacggg acacccagtc
4021 tagtaacgat tgatgggcgg aggagcatct ttagcaacgg aagcttcatt attcgcacgg
4081 tgaaagcaga agactccggc tattacagct gcattgccaa taacaactgg ggatctgatg
4141 aaattatttt aaacttacaa gtacaagttc caccagatca gcctcggctt acagtctcca
4201 agaccacgtc ttcctccatc accctttctt ggctccctgg agacaacggg ggcagctcta
4261 tcagaggata catactgcag tactccgagg acaatagtga gcagtggggg agttttccaa
4321 tcagccccag cgaacgttcc tatcgcttgg aaaatctcaa atgtgggact tggtataagt
4381 tcacactgac agcccaaaat ggagtgggcc cagggcgcat aagtgaaatc atagaagcaa
4441 agaccttagg aaaagagccc cagttctcaa aggagcagga gctgtttgcc agcatcaaca
4501 ccacacgcgt gaggctgaac ctcattggct ggaatgatgg cggctgcccc atcacctcct
4561 tcacactaga gtacaggccc tttgggacca cagtttggac cacagctcag aggacctctc
4621 tctccaagtc ctacatcctg tatgacctgc aggaagccac ctggtatgag ctgcagatgc
4681 gggtgtgcaa cagtgcgggc tgcgcggaga agcaggccaa cttcgctacg ctgaactacg
4741 atggcagtac aattcctcca ctcattaagt cagttgtcca aaacgaagaa gggctgacga
4801 ccaacgaggg gctcaagatg ctggtgacca tctcctgtat cctggtgggg gtcttgctgc
4861 tgtttgtgct cctgctggtt gtgcggagga ggcggcggga gcagaggcta aagaggctgc
4921 gagatgcaaa gagtttagct gaaatgctca tgagtaagaa tacccggact tcagatacgt
4981 taagcaagca acagcagacc ctgcgaatgc acatcgacat acccagggct cagcttttga
5041 ttgaagagag agacacgatg gagaccattg atgatcgctc cacggttctg ttgacggatg
5101 ctgactttgg agaggcagct aagcagaagt ccctgacggt cactcacacg gtccattacc
5161 aatcggtgtc tcaggccact gggcccttag tggatgtttc agacgctcgg ccgggaacga
5221 atcccaccac caggaggaat gccaaggctg ggcccacagc gagaaaccgc tatgccagcc
5281 agtggaccct caaccgaccc caccccacca tctcagcaca caccctcacc acagactgga
5341 ggctgccaac acccagggct gcaggatcag tagacaaaga gagcgacagt tacagcgtca
5401 gcccctcgca agacacagat cgagcaagaa gcagcatggt ctccacagaa agtgcctcct
5461 ccacttacga agaactggcc agggcctacg aacacgccaa gatggaagag caactgaggc
5521 acgccaagtt caccatcacg gagtgcttca tatcagacac gtcatcggag cagttgacgg
5581 cagggacaaa tgagtacacg gacagtctga cctccagcac cccttccgaa tcgggaatct
5641 gcaggttcac tgcatctccc cccaaacctc aggatggagg aagagtaatg aatatggcag
5701 ttccaaaggc acatcggcca ggtgacctca tacatttgcc tccatacctt agaatggact
5761 ttttgttaaa ccgaggtggt ccaggcacca gcagggacct gagcttagga caagcatgct
5821 tggaacctca gaaaagccgg accctgaagc gccccacggt cctggagccc atcccgatgg
5881 aagccgcctc ctccgcctcc tccacgagag aaggacagtc gtggcagccg ggggccgtgg
5941 ccacattacc tcagcgggag ggagcagagc tgggacaggc agctaaaatg agcagctccc
6001 aagaatcact gctcgactcc cggggccatt tgaaaggaaa caatccttac gcaaaatctt
6061 acaccctggt ataacagaca gcatgactgg acagcggttg taaatacaat tcaaacaatt
6121 caatcaaagc tacctttttt ttacggaatt ccaatattta taattaaaga aaattgccaa
6181 aatatattaa aaaaaaaaaa gagaaaatac tgaaaccaca gacagtgcaa agactctcct
6241 gctttttttc tgtctgagtg tgagctccat ccgcctgggc atctgatttt ttgggaaaga
6301 agtccagttt tatgatcttc acaggctatt gcatttttac tgattttcta caaaagtgca
6361 tgggggggat taattaaacc ttctgactgg aagttctatc acacaagagg caagaaagaa
6421 aacagggtgg gtgggaaatc agcctatttg tgaatttaaa aggaacaccg atttgcgggc
6481 aggggaaaac ttcagtcacg tttgcacacc tttctttccc attagaaacc gggttctcaa
6541 tttggtcttc ttttgttgtt aattaggatg agtgccgtca gtgaaggggt ggggggaatc
6601 aatttggttt tctctcttgt ttctttttta atttaatgag acactctttg cattttgtct
6661 aagcgaaata aaaaagaaaa ggttgtctgc cttt
//