LOCUS AB112564 2331 bp DNA linear BCT 15-NOV-2011
DEFINITION Pseudomonas ficuserectae hrpS, hrpA, hrpZ, hrpB genes, complete
and partial cds, strain: L-7.
ACCESSION AB112564
VERSION AB112564.1
KEYWORDS .
SOURCE Pseudomonas ficuserectae
ORGANISM Pseudomonas ficuserectae
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 2331)
AUTHORS Inoue,Y. and Takikawa,Y.
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Yuichi Takikawa
Graduate School of Science and Technology, Shizuoka University;
836 Ohya, Suruga-Ku, Shizuoka, Shizuoka 422-8529, Japan
REFERENCE 2
AUTHORS Inoue,Y. and Takikawa,Y.
TITLE The hrpZ and hrpA genes are variable, and useful for grouping
Pseudomonas syringae bacteria
JOURNAL J. Gen. Plant Pathol. 72, 26-33 (2006)
COMMENT
FEATURES Location/Qualifiers
source 1..2331
/db_xref="taxon:53410"
/mol_type="genomic DNA"
/organism="Pseudomonas ficuserectae"
/strain="L-7"
CDS <1..481
/codon_start=2
/gene="hrpS"
/product="hrp regulatory protein HrpS"
/protein_id="BAD20866.1"
/transl_table=11
/translation="VIASAQSSLDVAVEQGKFRRDLYFRLNVLTLQLPPLRTQPERIL
PLFKRFMAAAAKELDVASADVCPLLQQVLLGHDWPGNIRELKAAAKRHVLGFPVLGVD
PQSEEHLACGLKSQLRAIEKALIQQSLKRRRNCIDAASLELDMPRRTLYRRIKELQI"
CDS 575..889
/codon_start=1
/gene="hrpA"
/note="function is unknown"
/product="HrpA"
/protein_id="BAD20867.1"
/transl_table=11
/translation="MKLSSMGTKLINGGGNALQGLSDINSAKDRQTSLYKNTGSNDSA
NSVYDNLRKGDKENDKLQDISTEEGAKRREESMLAGFEAADEKLANQIVAKKIENAVV
QF"
CDS 943..1953
/codon_start=1
/gene="hrpZ"
/product="harpin protein HrpZ"
/protein_id="BAD20868.1"
/transl_table=11
/translation="MQSLSLNSSLQTPAMALVLVRPETEVTGANTSSKALQDVIVQLA
QELTRNGQLDESSPLGKLLAKSMAADGMAGGGIEDVIAALDKLIHEKLGDNFGAAADS
LGGVGQPDLMTQVLNGLAKSMLDDLLTQQGNGANFSNDDMPMLEKIAQFMDDNPAQFP
VPDSGSWVNELKEDNFLDGDETAQFRAALDIIGQQLGNQQNDTGDFAAGDGGLGSFSA
GSSGPVGDPLIEANTGPGNGTNSTGDVGQLIGELIDLGLQSVLSGGGLGTPPVSLQAN
ASLGSEQNLDQLLGGLVRKGLEATLMGTGQIGNDLNSSAAQVANLLVNALLQSNRNQA
AA"
CDS 1981..>2331
/codon_start=1
/gene="hrpB"
/product="hrp associated protein HrpB"
/protein_id="BAD20869.1"
/transl_table=11
/translation="MTISHIGNVKSIPSELGQDVPQGLVLEPDQADVDLFTAAAQPDK
VSSGAPLSEHIASAISGGLGETEKVSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQ
TALTTKVVSKTAQAI"
BASE COUNT 522 a 632 c 692 g 485 t
ORIGIN
1 cgtgatcgct tcggcccagt cgtctctgga tgttgccgtc gagcagggga aatttcgtcg
61 ggatctgtac tttcgcctta acgtgttgac actccagctg ccacccttgc gcacacagcc
121 tgagcgcatt ctgcccttgt tcaagcgctt tatggccgcg gctgccaaag aactggacgt
181 cgcctcggcc gatgtctgtc cgctgcttca gcaggtgctg ttggggcatg actggcccgg
241 caatatccgt gagctcaagg ctgctgcaaa gcgccatgta ttgggtttcc cggtgttggg
301 tgtcgacccg cagagtgaag aacacttggc ctgtgggctc aaatcccagc tgagggcgat
361 tgaaaaggcc ctgattcaac agtcactcaa gcgccgccgt aactgcattg atgcggcaag
421 cctggagctg gacatgccac gccgcacgct ctatcgacgt atcaaggagt tgcagatctg
481 atttttttgt gtgaacgctg gaacccattc accgcctgtc accacctagt tgtaccaagc
541 aattacgctg gtactgacta aagggtatca aacgatgaag ttatccagca tgggcaccaa
601 gttgatcaac ggcggcggta acgccttgca aggtctgagc gacataaaca gcgccaaaga
661 ccgtcagacg tcgctgtaca aaaacaccgg ttccaacgat tccgcaaatt ctgtgtatga
721 caacctcaga aagggtgaca aagagaacga taaactgcag gacatttcca ccgaagaggg
781 tgccaagcgt cgcgaagaaa gcatgctggc gggcttcgag gctgctgatg aaaaactggc
841 taaccagatc gtggcaaaga aaatcgagaa cgcggtcgtc cagttctgat gtcttgagcg
901 ccccttcaca cctgaagggg cggtttcttt gaggaggttg tgatgcagag tctcagtctt
961 aacagctcat tgcagacccc ggcgatggcg cttgttcttg ttcgtcctga aaccgaggtt
1021 acgggtgcga acacatccag caaggcgctt caggatgtca tcgtgcagtt ggctcaagag
1081 ttgacccgta atggtcaact ggacgagagc tcgccattgg gcaagctgct ggcgaagtcg
1141 atggcggccg acggcatggc tggcggcggc attgaggatg tcatcgccgc gctggacaag
1201 ctgatccatg aaaaactggg tgacaatttt ggcgccgctg ccgacagtct gggcggtgtc
1261 ggacagcctg acctgatgac gcaagtgttg aacggtctgg ccaaatcgat gctcgatgat
1321 cttctgaccc agcaaggtaa cggggctaat ttttccaatg acgacatgcc gatgctggaa
1381 aagatcgcgc agttcatgga tgacaaccct gcacagtttc ctgtgccgga ctcgggctcg
1441 tgggtgaacg aactcaaaga agacaatttc ctcgatggcg acgagaccgc tcagttccgt
1501 gctgcgctcg atatcatcgg tcaacagctt ggcaaccagc agaatgatac tggcgatttc
1561 gcagcaggcg atggcggctt gggcagcttt tcagccggtt catccggccc ggtaggtgac
1621 ccgctgatcg aagccaacac cggccccggg aacggtacaa attccacggg tgacgtgggg
1681 cagttgatcg gtgagttgat cgaccttggc ctgcagtcgg tattgtccgg cggcggactg
1741 ggaacccccc cggtcagtct gcaggcaaac gcttcgctgg gtagcgaaca gaatctggat
1801 cagttgctcg gcggcctggt gcgtaaaggg ctggaagcga cgctcatggg gactggtcag
1861 atcggcaatg acctgaacag cagtgcagcg caggttgcca acttgctggt caacgcgctg
1921 ctgcaaagta accgcaacca ggcggctgcc tgacggacac ccgcctgacg gagaactcac
1981 gtgaccattt cccatattgg taatgttaaa agcatcccgt ccgaacttgg gcaggatgtg
2041 ccacaggggc tcgttctgga accggaccag gctgatgtcg acctgttcac cgccgccgcg
2101 caaccggaca aggtttcgag tggtgcgccg ctttccgagc atatcgccag tgcgatttcc
2161 ggtggtctgg gcgaaaccga aaaggtctcc cagcaagcca tgcgctccat gaaaaaagcc
2221 tctggtaccg gtgatgcgct ggatattgcg gcgatgacca gaaccttgtc gcaatgctcg
2281 ttgcagactg cgctcacgac caaagtcgtg agcaagactg cgcaggcgat c
//