LOCUS LC271617 1999 bp DNA linear VRT 20-MAR-2018 DEFINITION Lefua nikkonis mitochondrial cytb gene for cytochrome b, partial cds, haplotype: LNhapY. ACCESSION LC271617 VERSION LC271617.1 KEYWORDS . SOURCE mitochondrion Lefua nikkonis (stone loach) ORGANISM Lefua nikkonis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Lefua. REFERENCE 1 (bases 1 to 1999) AUTHORS Yamahira,K. and Mokodongan,D.F. TITLE Direct Submission JOURNAL Submitted (26-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Kazunori Yamahira University of the Ryukyus, Tropical Biosphere Research Center; Senbaru 1, Nishihara, Okinawa 903-0213, Japan REFERENCE 2 AUTHORS Ooyagi,A., Mokodongan,D.F., Montenegro,J., Mandagi,I.F., Koizumi,N., Machida,Y., Inomata,N., Shedko,S.V., Hutama,A.A., Hadiaty,R.K. and Yamahira,K. TITLE Phylogeography of the eight-barbel loach Lefua nikkonis (Cypriniformes: Nemacheilidae): how important were straits in northern Japan as biogeographical barriers? JOURNAL Ichthyol Res 65, 115-126 (2018) REMARK DOI:10.1007/s10228-017-0597-0 COMMENT FEATURES Location/Qualifiers source 1..1999 /country="Japan" /db_xref="taxon:187331" /haplotype="LNhapY" /mol_type="genomic DNA" /organelle="mitochondrion" /organism="Lefua nikkonis" D-loop 1..939 /note="mitochondrial control region" gap 940..1039 /estimated_length=unknown CDS <1040..>1999 /codon_start=1 /gene="cytb" /product="cytochrome b" /protein_id="BBB21941.1" /transl_table=2 /translation="GLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRSMHANGASFFF ICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNL LSAVPYMGNALVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNN PAGLNSDADKISFHPYFSYKDLFGFAVMLLALTSLALFSPNLLGDPDNFTPANPLVTP PHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMIVPILHTSKQRGLTFRPVTQL FFWTLVADMAILTWIGGMPVEHPFIIIGQIASLLYFALFLVLIP" BASE COUNT 582 a 439 c 280 g 598 t ORIGIN 1 tagcatggtt tagcattatt atgcatttat atgcataata atgcatgtgt tacattagtg 61 tatgatacat taatgtatta acaccataaa tttatttgaa acataaagca agtactaact 121 tctaagctat tacataagac atattattaa cattaaacaa aaatttacat aatacattca 181 tattcctgat ctagatgaaa aatgtcccac agaatcttac cttgcgttac tcaaaaataa 241 atttaagcaa gaatttatta atgtagtaag aaaccaccaa ccagtttata taattgcata 301 atatacatga tagaatcagg gacataactg gcgggtggta tattatgaat tattactggc 361 atctgattct cttgtcacgg gcatgggaat gtgaattccc catattcaaa tctatactgg 421 catctgattc atggtgtagt acatatgtct cgttacccac caagccgggc attcttttat 481 atgcataggt tcttttttct ggtttccttt catccacatt tcagagtgca agctcaaatt 541 ctgaatcaag gtatgaacat ttttccttga tagacacaat ataatgaatg atttgaagac 601 ataaagataa gaattacatt gatttatctc aagtgcataa tacatcctta ttcaacacat 661 ccttatacta tatgccccct tttggtttcc gcgcgtcaaa cccccctacc ccctacgctc 721 agtgaatcct gtttttcctt gtcaaacccc aaaaccaaag aaggctcgac caagcgcaat 781 aaagttaacg agtttaggta gtgttaactt atgccaccac atattatata tataacatat 841 acatatatga ctccatattt ttttgtcgct gaaagcctga aagccagatg aaaaaaatta 901 taaaataatt tcaacactaa aatttcaaag aaagttttan nnnnnnnnnn nnnnnnnnnn 961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1021 nnnnnnnnnn nnnnnnnnng gattattcct agctatgcat tatacatcgg acatctccac 1081 cgccttctca tcagtggcac atatctgccg agatgttaac tacggatgat taattcgaag 1141 catgcacgcc aatggagcat cattcttttt catttgtatt tacatacaca tcgcccgagg 1201 actatattat ggctcctacc tctacaaaga gacatgaaac gttggagttg tccttctcct 1261 actagtaata atgacagcct ttgtaggcta tgtattacca tgaggacaaa tatcattttg 1321 aggtgccaca gtcatcacca acctcctatc cgccgtcccc tacataggaa acgcacttgt 1381 acagtggatt tgagggggct tctcagtaga taacgcaaca ttaacacgat tctttgcttt 1441 ccacttctta ttccccttcg tcatcgccgc agccacagtt attcacctgc tatttctaca 1501 cgaaacagga tctaataacc cagcaggctt aaactcggac gcagataaaa tttcatttca 1561 cccttacttc tcttataaag atctctttgg atttgcagta atacttctag cacttacatc 1621 tttagcccta ttctccccca acctcttagg agacccagat aacttcaccc ccgcaaatcc 1681 gctagttaca cccccgcaca ttaaacctga gtggtacttt ttatttgcct acgcaattct 1741 tcgatctatt ccaaataaac ttggcggagt cttagcactt ctattttcca ttcttgtcct 1801 aataattgtg ccgattctcc acacctcaaa acaacgagga ctgacatttc ggccagtaac 1861 ccaacttttc ttctgaacct tggtcgcaga catggccatc ttgacatgaa ttgggggaat 1921 accagtagaa cacccattta ttattattgg ccaaatcgca tccctcttat actttgcact 1981 attcctagtc ctaatccca //