LOCUS LC101808 9689 bp DNA linear PLN 11-NOV-2016 DEFINITION Ipomoea nil Contracted/InCYP90C1 gene for cytochrome P450 90C1, complete cds, allele: contracted-2/ct-2, cultivar: Q851. ACCESSION LC101808 VERSION LC101808.1 KEYWORDS . SOURCE Ipomoea nil (Japanese morning glory) ORGANISM Ipomoea nil Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea. REFERENCE 1 (bases 1 to 9689) AUTHORS Hoshino,A. and Nitasaka,E. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) to the DDBJ/EMBL/GenBank databases. Contact:Atsushi Hoshino National Institute for Basic Biology; Nishigonaka 38, Myodaiji, Okazaki, Aichi 444-8585, Japan REFERENCE 2 AUTHORS Hoshino,A., Jayakumar,V., Nitasaka,E., Toyoda,A., Noguchi,H., Itoh,T., Shin-i,T., Minakuchi,Y., Koda,Y., Nagano,A.J., Yasugi,M., Honjo,M.N., Kudoh,H., Seki,M., Kamiya,A., Shiraki,T., Carninci,P., Asamizu,E., Nishide,H., Tanaka,S., Park,K., Morita,Y., Yokoyama,K., Uchiyama,I., Tanaka,Y., Tabata,S., Shinozaki,K., Hayashizaki,Y., Kohara,Y., Suzuki,Y., Sugano,S., Fujiyama,A., Iida,S. and Sakakibara,Y. TITLE Genome sequence and analysis of the Japanese morning glory Ipomoea nil JOURNAL Nat Commun 7, 13295 (2016) REMARK Publication Status: Online-Only DOI:10.1038/ncomms13295 COMMENT FEATURES Location/Qualifiers source 1..9689 /cultivar="Q851" /db_xref="taxon:35883" /mol_type="genomic DNA" /note="The lines Q853 and Q854 also have the ct-2 allele" /organism="Ipomoea nil" 5'UTR 1786..1846 /gene="Contracted/InCYP90C1" CDS join(1847..2124,5681..6014,6410..6559,6642..6908, 7662..7751,7841..7919,8052..8158,8250..8377,8967..9069) /allele="contracted-2/ct-2" /codon_start=1 /gene="Contracted/InCYP90C1" /note="CYP90C1" /product="cytochrome P450 90C1" /protein_id="BAV56705.1" /transl_table=1 /translation="MEEKTWESAAAATGSGLDLAIVIATAVMVAAAGVWLVVARRKET RKPDNDDGEIDGRVPRGSSGWPLLGETLDFIASGYTSRPVSFMEKRKSLYGKVFKTHL LGKPIIVSTDPEVNKVVLLNHGNIFVPSYPKSVTELFGKNSILQMNGSLHKRVHALIG TFLKSPLHKARLTAHIQNSVRRSLSAWADKNNGLVIYLQDHAKQIAFEVLVKVLLSVE PGQDLDFMKREFEEFMKGLICFPVKFPGTTLYKSLKAKGKLLKMVGKMVEERKKEIEK RDDPIDAIDVLLRDTGESDGTRQRLPLDFITSNLIEMMIPGEETLPTAMTLVVKFLSD NPVTLAQLVEENMKLRMRKLNSGEEYIWTDYMSLSFTQNVISETLRIANIINAVWRKA QKDVKIKGHLIPKGWCVLASLTSVHMDEENYENPYEFDPWRWEKPGININSSKFTPFG GGQRLCPGLELSRLEIAIFLHHFVTTYRWVAEEDEIVYFPTVKMRRKLPITITPLAVE HLL" mobile_element 3381..5043 /mobile_element_type="transposon:Tpn14" /note="Tpn1 family element; En/Spm (CACTA) superfamily, the 5' terminal sequence of Tpn14 in the ct-2 allele is deleted" /rpt_family="Tpn1" 3'UTR 9070..9278 /gene="Contracted/InCYP90C1" BASE COUNT 3049 a 1654 c 1758 g 3228 t ORIGIN 1 acgggaagat accattgctg aagtatccaa aaaataatat ttaaatgtag tttttttaaa 61 tttaaaatta attacaattt atgtgctgcg caaaaattga ttaccattat tgcaaaatct 121 tccaaattca aaagggtgtt tttattttga cacgatttgg tcctccatct atttgaccat 181 tgaccgtgat cgacgatctt cagaagaacc tttagctctc atcggagcac gtggaggcct 241 ccagaatgac attgcatcgg ttcggaaaca cgtcgtcttc ttcgctctgg tacgaactca 301 attacattga atccaaaggg aggatgaaga aaggcgaccg aatttggtag attgctttcg 361 gtagtggatt caaatgtaac agtgcggtct gaaatgcaac cggaacctta aaaacccgac 421 gatggaccat gaaattacat atatatcctc aaaaatcaca gttaacaaac ggtcacatag 481 acagatgacc aaattgtgct aaaattgcaa agttaaggac ttaattggtt gaaattgaaa 541 gtcaatgacc aatttgtgaa tttagctata gtcgaaggac cattctgagt atttactctt 601 gattaatttt atgtctatag ttttagagat attccaaatt taaaattgat tacaactttg 661 caaaaatcaa ttaaatattg ggaaaatggc actttttccc cctgagttat atacctatag 721 cattttttcc ccctaaatta ttgaagtgac tgtttttccc cctgaaatgt taaatggaca 781 tatttaccct taaactaaat atttaattta tttttttctc caacaaatta tgaccataat 841 ttggttcaaa ctaaacaaac actatagcaa ccaaaccgaa atattccaat tacaatttag 901 aatcgaaatt cgatatttag agtttattaa aatcgtgaac cggaacggac ggttcatgtt 961 ccgaaaaaaa ataaaataca tttattgttg aatttagact attttaaaat aaaaaataaa 1021 attttaaaat aaagacggtt caaaaccacg aatcagatcc ggaaccgccg gttcacggtt 1081 caagattcaa ttttttgata cataatttta ataaattgac atttaaatat tgggttctag 1141 atctgaatta taaccgtaaa ctattaattc gattgcttta gtatccggtt caattcaaat 1201 cgaacagtgg tcatccctac gtatacgcaa taatttgttg gtgtagtaaa ataaataaaa 1261 tgtttacttt aagggtataa atgtcaattt aatatatcag ggggaaaaag caccactttt 1321 agaataattg agggggctaa tgtgcttacc taaataattg agggagaaaa agtgctataa 1381 gtatataact caggggtaaa aagtgccatt ttcccttaaa tatttaaata tgattgactg 1441 atatggtata tgtaaatatg taataatatc tcaataatta tttactataa aatcaattgc 1501 cttttttttg ttctttattt ttttcttact attttgtctt agtaaaggtc tcattcggcc 1561 caccaaagaa ttttttccct accgctgttg aagcaaaaat ggcctttcat ttatggtgtt 1621 cgtatcccaa tcaaatattc accccccccc cccccccgcc acctaccacc ccactatccc 1681 cgcctccccg ccgttatata tatatataaa tatatagaga tagaagagac cactgcatgt 1741 actcactcat acatatatac atacactcag tatatctata taatatcgga ctactgagaa 1801 cgtatgtggt tttggattag atcgaagacg agaaaatcga gaagagatgg aggagaagac 1861 atgggaatcg gcggcggcgg cgaccggaag cggtttggac ttggctatcg tgatcgcgac 1921 ggccgttatg gttgccgcag ccggcgtttg gttggtggtt gcgcggcgga aggagacgag 1981 aaaaccggat aacgatgacg gagaaattga cggcagagtt ccgagaggaa gctccggctg 2041 gccgctgtta ggcgaaacgc tcgatttcat agctagcggc tacacctccc gccccgtctc 2101 gttcatggag aaacgcaagt ctctgtgagt aaacggcctt tccttttctc tctctctctc 2161 tctctctctc catttctcct taattttctt atttttttta aacacaaata ttttaaattc 2221 tccaggaaat ttcactcctt aatccttatt gacttcattt ttaaaatatt ctaatttata 2281 tatttaataa attatattag ttattaaatt gaaaatataa tataatataa tataatataa 2341 taatttagct ttacgaataa taatgtatta atcttgatag agatgtggga ttaatcatgt 2401 taattaaatt ccacaactag cagttctcat gtcttctttc tattattgcc gacaccacct 2461 tatgaataac tccgttaact ccaaaaatta tttgtcgacc tttagtttgg tgatatccac 2521 tcacaatttt ataattcttt tttttttttt ttcaccgttg catctaacaa tctcacgtgt 2581 gacatggttt ggtctcatat gttttgtttt tattattaaa ctaatcacat tctaactcct 2641 aaagttttgt tcccgtgaca caaatcttaa tgtcaaaatt cgagcacttt gcccctgaat 2701 tgagcaaccc gatacaacgg gaattagtct aagtatttta cgggtttaaa aatgtctaac 2761 aacaaaatgt tatgtaatat aaaccaaaag cttattgtca tgattttttt tattattata 2821 acaattttta tttatatagt ctataattat gaaaatatct aattaggcta aatatttggt 2881 tagattaagt attaaaataa tgaaaagaaa atatagtggg acaaaaataa tgtaaaacat 2941 caaattagtg aggaattttg tgtagtaccc taaaataatt taggactata ttatcagcct 3001 tgattcttta aataattttt tatttctttt tcattacatt agcgagtaaa acatgacccg 3061 aatttggctc tttagaagga actttaaaat attttctata atagctaaga atatgaattt 3121 ttttttttat gagagaaatt cgcattcatt agaggaagat atgcaatggg taaattctta 3181 tgtaatagga tacaaatcac atgagaaaag gtaaattgta tcaaaaagat tttgtgtctt 3241 tttatgtgat actttgaatc gaaaagaata ttaacaagaa tcaaatttat gatttgtaat 3301 tagaagaatt atgattgtgg agagagaaag atgggggttt aaatggaatg agagtaggat 3361 gaaagagggt ttgacttaaa tatataagtt tgttgctctg aaatttgggt gtagaatgca 3421 tgtgaaagct cgaaattttg ggcattttag tgcttgatgt tttgtaatta ataagggatt 3481 tctttgtcgt ttgtgtttaa gtttcatgca ttatattctc atgagatttt atctgaattg 3541 tttatcaaat ttgggtgtct aataatctct caaagacttg aaggctaaga caagaacctg 3601 aatcctgtgt atctgatttg ttaacatttt ttttttggga gtgcatttgt attgcttttt 3661 caagtgtctt tctttacttg ttggctacac ttgttatgat tctctttagg gaactcatta 3721 tcttgttatg aacaccttga gtatgaatgt ggtgagagta agagggcagt ttcatttcat 3781 tgcaaattat ttatatctat actaatttat tttcttactt tttacatgta gtttcaacaa 3841 gttgattatg acaaagcggt tattgatctg gtgcgatttg aatgggccga tattctatca 3901 agtcacatag agtaggtatg atttggtcat tcgaacgttg tgatcatttg gacttgaatt 3961 ggttcgggga attgtttttt tgtgtagtag tattatgact tggatgataa ttagaattgg 4021 tcatggaagt cttttgactt gttattttga atcttattag cttgtgcaca attatgtaac 4081 tacactttgc aacatatggt gaatggataa attgtttttt tttatacgat tataatttaa 4141 gcaggtgaaa aacggttaaa aaccgttgtc tattttacaa tagacaacaa ttagaaaccg 4201 ttgacttttc tacaaaagac aacagtttat gggtgtgaca aaagcgattt caacaacaca 4261 caatagacaa cggtttataa ctgttgtctt ttaaagaaaa gacaacagtt aaaaaccgtt 4321 gtctatgtac gtgactttta acaacactgg ttttaacaac gcttaataga caacggttaa 4381 aaaaccgttg tcgttggtag aaaagacaac ggttattaac cgttgtctat tgcgtgactt 4441 ttaacaacac cggtttcaac aacacttaat agacaacggt taaaaaaccg ttgtcgttgg 4501 tagaaaagac aacggttaat aaccgttgtc tattgcgtga cttttaacaa caccggtttc 4561 aacaacactt aatagacaac ggttaaaaaa ccgttgtcgt tggtagaaaa gacaacggtt 4621 aatcaccgtt gtctattgcg tgacttttaa caacaccggt ttcaacaaca cttaatagac 4681 aacggttaaa aaaccgttgt cgttggtaga aaagacaacg gttaataacc gttgtctatt 4741 gcatgacttt taacaacacc ggtttcaaca acacttaata gacaactgtt aaaaaaccgt 4801 tgtcgtttct agaaaagaca acggttatta accgttgtct atgtgcgtga cttacaacaa 4861 caccggcttc aacaacactt aatagacaac ggttaaaaaa ccgttgttgt ttctagaaaa 4921 gacaacggtt aaaaaaccgt tgtctatgcg cgggacttac aacaacaccg gcttcaacaa 4981 cagaaactat acccctacga caacggttaa taaccgttgt ctatgtgcat ttttcttgta 5041 gtgatgatgc tctgactgca aaaaggaaac atctttttcc atggaagcat tgtaccctcc 5101 ccttttgctt taccaataga tggctacatt attactgcac ccagcagcag cttccctttc 5161 ccttcatcaa aaacaagaaa agattttgca acaaagcagc attcatttta ctaattataa 5221 aagctgccac tcccccccac tctactattc tagcccctgt accctattat cctactcact 5281 tccccaacca gaaaaacctc acatccccag ccttatatcc caaattaact agatttacac 5341 atttctgaaa gttagattgc acattaataa ctatatgttc aacacgtctc ctcacgttca 5401 tgacctttgg attagttata atattaaatt gaagcactct attccaacta aaaacctaag 5461 cttatagttg aattgcacat taatggttat atgctcaaca ggccgagctt atttaagaat 5521 ttatagttta ttttaaacta ctaataagtt ataagttctg tttgataatg ttctcaataa 5581 gtctttatat atatatatat atatatatat atatatatat atatatatag tgatgcaaat 5641 gaattaatgt gtgtgggatt gtgtgttgat gggtgaaaag gtatgggaag gtgttcaaga 5701 cacacttgtt ggggaaacca atcatagtat caaccgaccc ggaggtgaac aaggttgtgt 5761 tactgaacca cggcaacata ttcgtgcctt cctatccgaa atcagtgacg gaactgtttg 5821 gcaagaattc aattctgcag atgaacggat ctctgcacaa gagagtacac gcgctcatcg 5881 gaaccttctt gaaatcgccg ctgcacaaag cccgtctcac cgcccacatt cagaactctg 5941 tccgccgctc gctgtcggct tgggcggata aaaacaacgg cctcgttatt tacctccaag 6001 atcatgccaa acaggtcctt atccataccc tctgtttata tccacccaca tgcatgcatt 6061 tatttacaat tcctagttgt ggaccccacc ttttttgggg acaattttct ttttaaataa 6121 tgatagattc tttttttttt taaataattt tatggtgcaa ataggggtga gtttaaaaat 6181 gaatgataag ttataaagac ttaattatta gtattacagc aattatttga tttgacattt 6241 atatgtaagg atattaatca tgtggggagc ccaagtgccc aacaaagatt gtaatgaaat 6301 tattctgaag atatgtttgg tggatgaata ttgtatgtac tgttatatat gcaaaaataa 6361 tgttgtaccg tgtaataatt ttttttttat tctttttgga taccttaaga ttgcgttcga 6421 agttctagtc aaagtgctgt tgagtgttga gccaggtcaa gatttggatt tcatgaagag 6481 agaatttgaa gaattcatga aggggttgat ctgttttcct gttaaattcc ctggaacaac 6541 gttgtataag tcccttaagg tatgccatgt cactttttat ttaattatat aataattcgt 6601 actttttatt aatattttaa agataaaaat ataaattata ggcaaagggg aaattgttga 6661 aaatggttgg gaagatggtg gaagagagga agaaggagat agagaaaaga gacgatccaa 6721 ttgacgcaat tgatgtgttg ttacgtgaca cgggagaatc ggacgggacg aggcaacggc 6781 taccgttgga tttcatcacc agcaacctca tagagatgat gattcccggc gaggagacgc 6841 ttccgacggc gatgacgtta gttgtcaaat tcttaagtga caaccccgtg acgctagccc 6901 agttagtggt atgcattcct attttcatta atttatataa ttttcagctt tttaattaat 6961 tttagtgggt gtaataaacg gacggatggg atgggcgggc ggaaatcaac ggctgggatc 7021 agactgacgc ccacgagagt gcagtgggga cacggcagag gaaaaaacgt cactcgtatg 7081 attgtgcagt acccgtattt tttattaaaa aatgttttta atttaatatt tccatttgac 7141 ttttcacgtc actgtctgca cgaccgcacg tggggcatcc acgtgggtgt aaggagtgtg 7201 ggatgtgtcg tcgccgtacg ttttcgattg gacaactttc tgccattgac gccctctact 7261 tttactgctt tgtccctccc tcttgtcacc gcctttattc cttttgcatt atttttccca 7321 aaattttcac attttttaaa aaattattac tcaggctgac tctattacaa tgtagtatct 7381 gtttataact actttcttaa tccaatgaag cacagagtta aaccatcttc actggggatc 7441 aaacccgtga ttcccatttg gtagagtctc tcttgctccg cccttcacat tttagtccga 7501 cagaagggat aaatcacagt cactcattaa accccaatga gttacacatt acggcccgat 7561 cctatgttct tgttcataat ttgtcattct aaaatcaaca gacatgtttt gtaggattat 7621 ttttttttct aatatataaa agattaattt tcttgttgca ggaggagaac atgaaattac 7681 gtatgcgaaa gttgaattcc ggggaagaat acatttggac cgattacatg tcactctcat 7741 tcacccaaaa tgtatattac tatactcgta aatattatat ctgtcttttt tagttttgac 7801 taaaagttcg aactgattgg gaaatgaatg aaaatgttag gtgattagcg agaccctaag 7861 gatagcaaat attataaatg cagtgtggag gaaagcacag aaagatgtca aaatcaaagg 7921 tctgattcct cccctattag catgtgaatt gtaatgaagc cagaaaatca aatcaacttt 7981 attttccggg taataattca aaaacagtaa ataaacaaaa taattttttt taaaatgttt 8041 tggtgttaca ggacatttga taccaaaagg gtggtgtgtc ttggcatcct tgacgtcagt 8101 gcacatggac gaggaaaact atgaaaaccc gtacgagttt gatccttgga gatgggaggt 8161 gtgttctcct gattataaga aaattattat atttcgatta attcagttaa ttaatttaat 8221 gtgtgacaaa aatatttatt attggacaga aacctggaat taacataaac agcagcaagt 8281 ttacaccatt cggtggtggg caaaggttgt gtcctggtct agaactctcc aggcttgaaa 8341 tcgcaatttt cctgcatcac ttcgttacaa cctataggta tattatttta aagagtgatg 8401 ttagacaaat ctttttcata ctactcattt taccatgtca aaatcaaaaa gttggaaaaa 8461 accctatcaa aattggtcag actgttaatt taataactac aaagttacaa gttcaactac 8521 ctaaggaagc agtctattga cccttttttt atttgagtca gtcagctatg tcaatctaga 8581 ctgatttact tcattgtgat cctctgccag ttaaggtcac aagatgtgat ttacctcgtg 8641 cataccttca ggtagtaggc tcgggtttct ctcgtcactc actcaactat gagtaaccga 8701 ggttgattta cctcattgtg attttttgtc gggtaaaatc acaaggcagg atataccccg 8761 tggtttggat ttctctcatt attaaaaaaa gaatgaaaaa tagtacctga tacagctgaa 8821 tagggtatac ttagttgtat cggatactat tactaccggt gctaatagta cactttgtga 8881 gtttgttttt gatattattg gtagcaatag taaattaatt attgagcaat aatggggact 8941 aaggagggtg atgttgtggt ggacaggtgg gtggcggagg aggacgaaat agtgtatttc 9001 ccaacggtga aaatgaggcg gaagctgccc atcaccatca cgcccttggc cgtggagcat 9061 cttctctagt tcagaccaaa caaatttgtc ccattatttt tccacctttt acagactacc 9121 tcagtattta tgtcgccatt tcttccttca aacactcgca ctgcaactca tatgccaact 9181 ggaaacgttg taattttatg gcgatgaggc ccaggccagt ctgtagattc aaccagggaa 9241 acgattgtat ggtcttgaat agttttgagt ataaatgctt tttttttttt tttttttaat 9301 tcaattgata agttaaattt tacttgaatt atttgccgtt ttagtcatga ttgatataca 9361 tacataaaca tattgatata gtcatatatc acctacatac aagattgtgg gaagttaggt 9421 tgttagtttg agttatttca actccacttg gtggagagtt ggggtattga catgagtgtt 9481 ttgattgaaa aaatctgaaa agtttgagaa catttggaag gatgtaactt aactgactcg 9541 atctttagtc attcttccaa actttcactt ttataaccag ttgagctacc catgcggaca 9601 gagtgaaggg acaacctagg aaagttatca tgagtcatat acgctaaatt acttttctta 9661 aagttacttt catgcactaa acgttgggt //