LOCUS       JQ972028                 629 bp    DNA     linear   ENV 27-SEP-2012
DEFINITION  Uncultured crenarchaeote clone TS ammonium monooxygenase alpha
            subunit A (amoA) gene, partial cds.
ACCESSION   JQ972028
VERSION     JQ972028.1
KEYWORDS    ENV.
SOURCE      uncultured crenarchaeote
  ORGANISM  uncultured crenarchaeote
            Archaea; Crenarchaeota; environmental samples.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Lu,L., Han,W., Zhang,J., Wu,Y., Wang,B., Lin,X., Zhu,J., Cai,Z. and
            Jia,Z.
  TITLE     Nitrification of archaeal ammonia oxidizers in acid soils is
            supported by hydrolysis of urea
  JOURNAL   ISME J 6 (10), 1978-1984 (2012)
   PUBMED   22592820
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Lu,L., Han,W., Zhang,J., Wu,Y., Wang,B., Lin,X., Zhu,J., Cai,Z. and
            Jia,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2012) Chinese Academy of Science, The Institute
            of Soil Science, No. 71. East Beijing Road, Nanjing, Jiangsu
            210008, China
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="uncultured crenarchaeote"
                     /mol_type="genomic DNA"
                     /isolation_source="tea orchard soil"
                     /db_xref="taxon:29281"
                     /clone="TS"
                     /environmental_sample
                     /country="China: Zhejiang Province"
                     /PCR_primers="fwd_name: arch-amoaf, fwd_seq:
                     staatggtctggcttagacg, rev_name: arch-amoar, rev_seq:
                     gcggccatccatctgtatgt"
                     /note="amplified with species-specific primers"
     gene            1..>629
                     /gene="amoA"
     CDS             1..>629
                     /gene="amoA"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium monooxygenase alpha subunit A"
                     /protein_id="AFK28041.1"
                     /translation="MVWLRRCTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSYVIF
                     TLSQSLMLAVGAAYYLTFTGVPGTATYYALIMTVYTWIAKGAWFSLGYPYSFIVVPIW
                     IPSAILMDLAYWATKRNKHMLILVGGVLRGMSMSMFNMVNLLTIDDPLETAFKYPRTT
                     LPPYMTPIEPQVGKFYDSPVALGAGAGAVLTVTMTALGCKLTTWTYRWMA"
BASE COUNT          174 a          131 c          145 g          179 t
ORIGIN      
        1 atggtctggc ttagacgatg tactcactac ttattcatag tagtggtagc agtaaactcg
       61 accttgttga caatcaacgc gggtgactac atcttctata ctgactgggc atggacatca
      121 tatgtgatat tcactttatc acaatcattg atgctcgcag tcggtgcagc atattacctt
      181 acgttcactg gtgtaccagg aacagcaacc tactatgcgc tgataatgac agtgtataca
      241 tggattgcaa aaggtgcgtg gttctcctta ggatatccgt acagcttcat cgttgtacca
      301 atatggatcc catctgcaat attgatggat ctggcgtatt gggcaaccaa gagaaacaag
      361 cacatgctta tcttggttgg aggtgtgctg cgtggaatgt caatgtcgat gtttaacatg
      421 gttaatctat tgacaataga tgatccatta gagactgcat tcaagtatcc aaggactaca
      481 ttgcctccat acatgactcc tatagaacct caagtcggaa agttctatga cagtcctgta
      541 gcgttaggtg caggtgcggg cgcagttttg acagtcacaa tgactgcatt aggctgcaaa
      601 ttaacaacct ggacatacag atggatggc
//