LOCUS JN003287 793 bp DNA linear VRT 25-JUL-2016 DEFINITION Squalidus gracilis isolate CTOL00568 opsin (RH1) gene, partial cds. ACCESSION JN003287 VERSION JN003287.1 KEYWORDS . SOURCE Squalidus gracilis ORGANISM Squalidus gracilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Gobionidae; Hemibarbus-Squalidus clade; Squalidus. REFERENCE 1 (bases 1 to 793) AUTHORS Tang,K.L., Agnew,M.K., Chen,W.J., Vincent Hirt,M., Raley,M.E., Sado,T., Schneider,L.M., Yang,L., Bart,H.L., He,S., Liu,H., Miya,M., Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L. TITLE Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae) JOURNAL Mol. Phylogenet. Evol. 61 (1), 103-124 (2011) PUBMED 21672635 REFERENCE 2 (bases 1 to 793) AUTHORS Tang,K.L., Agnew,M.K., Chen,W.-J., Raley,M.E., Sado,T., Schneider,L.M., Yang,L., Bart,H.L., He,S., Liu,H., Miya,M., Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (20-MAY-2011) Biology, Saint Louis University, 3507 Laclede Ave, St. Louis, MO 63103, USA FEATURES Location/Qualifiers source 1..793 /organism="Squalidus gracilis" /mol_type="genomic DNA" /isolate="CTOL00568" /db_xref="taxon:180935" gene <1..>793 /gene="RH1" mRNA <1..>793 /gene="RH1" /product="opsin" CDS <1..>793 /gene="RH1" /codon_start=2 /product="opsin" /protein_id="AEJ07794.1" /translation="AYGVLAAYMFFLIITGFPVNFLTLYVTLEHKKLRTPLNYILLNL AVADLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMALWSIVTLAIERWL VVCKPISNFRFGENHAIMGVVFTWVMASSCAVPPLLGWSRYIPEGMQCSCGVDYYTRA EGYNNESFVIYMFLVHALIPFCVIFFCYGRLVCTVKEAAAQQQESETTQRAEREVTRM VVLMGFAYLVCWLPYASVAWYIFTHKGSEFGPVFMTIPAFFAKTSA" BASE COUNT 127 a 276 c 206 g 184 t ORIGIN 1 ggcatacggc gtcctggccg cttacatgtt cttcctcatt atcaccggct tccccgtcaa 61 tttcctcact ctgtacgtca cccttgagca caagaagctg cgtacgcccc tcaactacat 121 cctgctgaac ctcgccgtgg ccgatctctt catggtgttc ggcggcttca ccacgacgat 181 gtacacctcg ttgcacggct acttcgtgtt cggacgcctc ggctgcaacc tcgaaggctt 241 cttcgccacc ctgggcggtg aaatggcgct gtggtccatc gtcacgctgg ccattgagag 301 gtggctggtc gtctgcaagc ccatctccaa cttccgcttc ggcgagaacc acgccatcat 361 gggcgtcgtc ttcacgtggg tcatggccag ctcctgcgcc gtgccgcccc tgctcggctg 421 gtcccgctac atccccgagg gcatgcagtg ctcgtgcgga gtcgactact acacccgcgc 481 cgagggctac aacaacgagt ccttcgtcat ctacatgttt cttgtccacg ccctcatccc 541 cttctgcgtc attttcttct gctacggccg tctggtgtgc acggtcaagg aagccgctgc 601 ccagcagcag gagtccgaga ccacacagag ggctgagcgc gaggtcaccc gcatggtcgt 661 cctcatgggc ttcgcctacc tggtgtgttg gctgccctac gccagcgtgg cctggtacat 721 cttcacccac aagggaagcg agttcgggcc tgtcttcatg acaattccag ccttctttgc 781 caagacctcc gcc //