LOCUS       JN003254                1484 bp    DNA     linear   VRT 25-JUL-2016
DEFINITION  Squalidus gracilis isolate CTOL00568 recombination activating
            protein 1 (RAG1) gene, partial cds.
ACCESSION   JN003254
VERSION     JN003254.1
KEYWORDS    .
SOURCE      Squalidus gracilis
  ORGANISM  Squalidus gracilis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Hemibarbus-Squalidus clade; Squalidus.
REFERENCE   1  (bases 1 to 1484)
  AUTHORS   Tang,K.L., Agnew,M.K., Chen,W.J., Vincent Hirt,M., Raley,M.E.,
            Sado,T., Schneider,L.M., Yang,L., Bart,H.L., He,S., Liu,H.,
            Miya,M., Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L.
  TITLE     Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae)
  JOURNAL   Mol. Phylogenet. Evol. 61 (1), 103-124 (2011)
   PUBMED   21672635
REFERENCE   2  (bases 1 to 1484)
  AUTHORS   Tang,K.L., Agnew,M.K., Chen,W.-J., Raley,M.E., Sado,T.,
            Schneider,L.M., Yang,L., Bart,H.L., He,S., Liu,H., Miya,M.,
            Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2011) Biology, Saint Louis University, 3507
            Laclede Ave, St. Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..1484
                     /organism="Squalidus gracilis"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00568"
                     /db_xref="taxon:180935"
     gene            <1..>1484
                     /gene="RAG1"
     mRNA            <1..>1484
                     /gene="RAG1"
                     /product="recombination activating protein 1"
     CDS             <1..>1484
                     /gene="RAG1"
                     /codon_start=1
                     /product="recombination activating protein 1"
                     /protein_id="AEJ07761.1"
                     /translation="QIFQPLHTLRNAEKELLPGFHQFEWQPALKNVSSSWDVGIIDGL
                     SGWTTSVDDVPADTIARRFRYDVALVSALKDLEEDIMEGLRERGLDDSMCTSGFTVVV
                     KESCDGMGDVSEKHGTGPMVPEKAVRFSFTVMSISIRVEGEDDGITIFQEQKPNSELS
                     CRPLCLMFVDESDHETLTAILGPVVAERKAMLESRLIVSVGGLQRSFRFFFRGTGYDE
                     KMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERYEIWRKNPFSE
                     SADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEIGEVYQRSNPSREE
                     RRRWRSTLDKQLRKKLKLKPVMRMNGNYARRLMTREAVEVVCELVPSEERREALQRLM
                     ELYLQMKPVWRSTCPSRDCPDQLCQYSYNSQLFADLLSTTFKYRYDGKITNYLHKTLA
                     HVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKMXELE"
BASE COUNT          379 a          359 c          397 g          347 t
ORIGIN      
        1 cagatattcc agcccctgca cactctacgt aatgctgaga aagagcttct ccccgggttc
       61 caccaatttg aatggcagcc agctttaaaa aacgtctcca gttcctggga tgttggcatc
      121 attgatggcc tctctggttg gacaacctct gttgatgatg tccctgcgga caccatcgct
      181 agacgattcc gctacgatgt ggcattggtt tctgcattaa aagacctgga ggaggacata
      241 atggaaggac taagagagag gggactagat gacagcatgt gcacctctgg ctttactgtg
      301 gtggtgaaag aatcatgtga tggtatggga gatgtcagtg agaagcatgg aactggtcca
      361 atggttcctg agaaggcagt gaggttttcc ttcacagtca tgtccatctc catccgagtt
      421 gagggtgagg acgatggcat caccatcttc caggaacaaa agccaaactc tgagctctct
      481 tgtagacctt tgtgcctcat gtttgtggat gagtctgacc acgagaccct gacggcaatc
      541 ctgggaccgg tggtagcaga gcggaaagcc atgctggaaa gccgacttat cgtatctgtt
      601 ggtggtctgc aacgctcttt taggttcttc ttccggggta caggctatga tgagaagatg
      661 gttcgtgaaa tggaaggcct cgaagcatca gggtccactt atatttgcac actctgcgac
      721 tcaacccgag ctgaagcctc ccaaaacatg gtgctgcatt ccatcacacg tagccacgat
      781 gaaaaccttg agcgctatga gatctggagg aaaaatcctt tctccgagtc cgccgatgaa
      841 ctccgtgacc gggtcaaagg tgtttccgcc aagcctttca tggagaccca gcctactctg
      901 gatgccctgc actgtgacat tggcaatgcg actgaattct acaagatctt tcaggatgag
      961 atcggcgaag tctaccagag gagcaatccg agtcgagagg aacgccgccg ttggcggtca
     1021 accctggaca aacagctaag aaagaaactg aaactcaagc ctgtgatgag gatgaatgga
     1081 aactatgcac gtcggctgat gacacgtgag gctgtggagg tggtctgtga gctggttcct
     1141 tccgaggaac gacgtgaggc actacagaga ctgatggagc tctacctcca gatgaagcct
     1201 gtgtggcgtt caacctgtcc ctcccgagac tgccctgacc aactgtgcca atatagctac
     1261 aactctcagc tgttcgctga cctcctttcc accacgttta agtaccgcta tgatggaaaa
     1321 attaccaact acctccacaa gactctggcc catgttcctg agattgttga gagagacggg
     1381 tcaatcggag catgggccag tgaaggcaat gagtctggga acaagctgtt cagacgtttt
     1441 cggaagatga atgcaaggca gtccaaaatg ttngaactng aaga
//