LOCUS       HM223938                 819 bp    DNA     linear   VRT 25-JUL-2016
DEFINITION  Cobitis striata isolate CTOL00230 rhodopsin gene, partial cds.
ACCESSION   HM223938
VERSION     HM223938.1
KEYWORDS    .
SOURCE      Cobitis striata
  ORGANISM  Cobitis striata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cobitidae; Cobitinae; Cobitis.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Tang,K.L., Agnew,M.K., Hirt,M.V., Sado,T., Schneider,L.M.,
            Freyhof,J., Sulaiman,Z., Swartz,E., Vidthayanon,C., Miya,M.,
            Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L.
  TITLE     Systematics of the subfamily Danioninae (Teleostei: Cypriniformes:
            Cyprinidae)
  JOURNAL   Mol. Phylogenet. Evol. 57 (1), 189-214 (2010)
   PUBMED   20553898
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Tang,K.L., Agnew,M.K., Chen,W.J., Hirt,M.V., Sado,T.,
            Schneider,L.M., Freyhof,J., Sulaiman,Z., Swartz,E., Vidthayanon,C.,
            Miya,M., Saitoh,K., Simons,A.M., Wood,R.M. and Mayden,R.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2010) Biology, Saint Louis University, 3507
            Laclede Ave, St. Louis, MO 63108, USA
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cobitis striata"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00230"
                     /db_xref="taxon:149980"
     mRNA            <1..>819
                     /product="rhodopsin"
     CDS             <1..>819
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ADJ55996.1"
                     /translation="VAPWAYACLAAYMFFLIITGFPXNFLTLYVTIEHKKLRTPLNYI
                     LLNLAIADLFMVFGGFTTTMYTSLHGYFVFGRLGCNIEGFFATLGGEXGLWSLVVLAI
                     ERWMVVCKPISNFRFGENHAIMGVAFTWIMACTCAVPPLLGWSRYIPEGMQCSCGVDY
                     YTRAPGXNNESFVXYMFIVHFSIPLIVIFFCYGRLVCTVKEAAAQQQESETTQRAERE
                     VTRMVXIMVIXFLICWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNPC"
BASE COUNT          148 a          216 c          192 g          250 t
ORIGIN      
        1 gtggccccgt gggcatatgc ctgcttggct gcttacatgt ttttcctcat yatcaccggg
       61 ttccctrtca attttctcac actgtatgtc accatcgagc acaagaagtt acgcacaccc
      121 ctcaactaca ttctgttgaa cctcgccatt gctgaccttt ttatggtttt cggcggtttc
      181 accacaacga tgtacacctc attgcatggc tattttgttt tcggacgtct tggctgcaac
      241 atcgaaggct tttttgctac tctgggtggt gaaatkggsc tctggtccct ggtcgtgctg
      301 gccatcgaga ggtggatggt tgtctgtaag cccataagca actttcgctt tggagagaac
      361 catgccatca tgggtgttgc yttcacttgg ataatggcct gcacctgtgc ygtgcctccc
      421 ctcctcggct ggtctcgtta catccctgag ggaatgcagt gctcatgtgg agttgactac
      481 tacacccgtg cccctggyrt caacaacgag tcctttgtyr tctacatgtt cattgtccac
      541 ttcagcattc cacttattgt tattttcttc tgctatggtc ggcttgtctg cacygttaaa
      601 gaggctgctg cacagcagca ggagtctgag accactcaga gggccgagcg tgaggtcacc
      661 cgcatggtcr taataatggt cattgstttc ttgatttgtt ggctgcccta tgctggtgtg
      721 gcctggtata ttttcaccca ccagggaagt gaatttggac ctgtcttcat gacactgcca
      781 gccttctttg ccaagacgtc tgctgtctac aacccctgt
//