LOCUS       FJ197066                 827 bp    DNA     linear   VRT 26-JUL-2016
DEFINITION  Aphyocypris chinensis isolate CTOL00283 rhodopsin (RH) gene,
            partial cds.
ACCESSION   FJ197066
VERSION     FJ197066.1
KEYWORDS    .
SOURCE      Aphyocypris chinensis
  ORGANISM  Aphyocypris chinensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Xenocyprididae; Xenocypridinae; Aphyocypris.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Mayden,R.L., Chen,W.J., Bart,H.L., Doosey,M.H., Simons,A.M.,
            Tang,K.L., Wood,R.M., Agnew,M.K., Yang,L., Hirt,M.V.,
            Clements,M.D., Saitoh,K., Sado,T., Miya,M. and Nishida,M.
  TITLE     Reconstructing the phylogenetic relationships of the earth's most
            diverse clade of freshwater fishes--order Cypriniformes
            (Actinopterygii: Ostariophysi): a case study using multiple nuclear
            loci and the mitochondrial genome
  JOURNAL   Mol. Phylogenet. Evol. 51 (3), 500-514 (2009)
   PUBMED   19141325
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Chen,W.-J. and Agnew,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Department of Biology, Saint Louis
            University, 3507 Laclede Avenue, Saint Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Aphyocypris chinensis"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00283"
                     /db_xref="taxon:140595"
     gene            <1..>827
                     /gene="RH"
     mRNA            <1..>827
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>827
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACJ83162.1"
                     /translation="QYYLVEPWAYGCLAAYMFFLILTGFPINFLTLYVTLEHKKLRTP
                     LNYSLLNLAVADLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMALWSIV
                     TLAIERWLVVCKPISNFRFGENHAIIGVIFTWVMACSCAVPPLVGWSRYIPEGMQCSC
                     GVDYYTRAEGYNNESFVIYMFTVHAVIPFCVIFFCYGRLVCAVKDAAAQQQESETTQR
                     AEREVTRMVILMGFAYLVCWVPYASTAWYIFTHKGTSFGPVFMTIPAFFAKTSAVYNP
                     "
BASE COUNT          142 a          279 c          203 g          203 t
ORIGIN      
        1 cagtactacc tggtggaacc gtgggcctac ggctgcctgg ccgcttacat gttcttcctc
       61 attctcaccg gcttccccat caatttcctt actctgtatg tcaccctcga gcacaagaag
      121 ctgcgtacac ccctcaacta cagtctgctg aacctcgccg ttgccgacct cttcatggtg
      181 ttcggtggct tcaccacaac gatgtacacc tcgttgcacg gctacttcgt gttcgggcgc
      241 ctcggctgca acctcgaggg cttcttcgcg accctgggtg gtgaaatggc gctctggtcc
      301 attgtcacgc tggccatcga gaggtggctc gtcgtctgca agcccatcag caacttccgc
      361 ttcggagaga accacgccat catcggcgtc atcttcacgt gggtcatggc ctgctcctgc
      421 gccgtgcctc ccctagtcgg ctggtcccgt tacatcccag agggcatgca gtgctcgtgc
      481 ggagtcgact actacactcg tgccgagggc tacaacaacg agtccttcgt catctacatg
      541 ttcactgtcc acgccgtcat tcccttctgt gtcatcttct tctgctacgg ccgtctcgtc
      601 tgcgccgtca aggatgccgc tgcccagcag caggagtccg agaccacaca gagagccgag
      661 cgcgaggtca cccgcatggt catcctcatg ggctttgcct acttggtttg ttgggtcccc
      721 tacgccagta cggcctggta catcttcacc cacaagggaa ccagttttgg gcctgtattc
      781 atgacaatac cagccttctt tgccaagacc tctgctgtct acaaccc
//