LOCUS       FJ197060                 831 bp    DNA     linear   VRT 26-JUL-2016
DEFINITION  Sarcocheilichthys variegatus microoculus isolate CTOL00557
            rhodopsin (RH) gene, partial cds.
ACCESSION   FJ197060
VERSION     FJ197060.1
KEYWORDS    .
SOURCE      Sarcocheilichthys variegatus microoculus
  ORGANISM  Sarcocheilichthys variegatus microoculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Sarcocheilichthyinae; Sarcocheilichthys.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Mayden,R.L., Chen,W.J., Bart,H.L., Doosey,M.H., Simons,A.M.,
            Tang,K.L., Wood,R.M., Agnew,M.K., Yang,L., Hirt,M.V.,
            Clements,M.D., Saitoh,K., Sado,T., Miya,M. and Nishida,M.
  TITLE     Reconstructing the phylogenetic relationships of the earth's most
            diverse clade of freshwater fishes--order Cypriniformes
            (Actinopterygii: Ostariophysi): a case study using multiple nuclear
            loci and the mitochondrial genome
  JOURNAL   Mol. Phylogenet. Evol. 51 (3), 500-514 (2009)
   PUBMED   19141325
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Chen,W.-J. and Agnew,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Department of Biology, Saint Louis
            University, 3507 Laclede Avenue, Saint Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Sarcocheilichthys variegatus microoculus"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00557"
                     /sub_species="microoculus"
                     /db_xref="taxon:149978"
     gene            <1..>831
                     /gene="RH"
     mRNA            <1..>831
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>831
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACJ83156.1"
                     /translation="QYYLAPPWAFAVLAAYMFFLIITGFPVNFLTLYVTLEHKKLRTP
                     LNYILLNLAVADLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMALWSIV
                     TLAIERWLVVCKPISNFRFGENHAIMGVVFTWVMACSCAVPPLLGWSRYIPEGMQCSC
                     GVDYYTRAEGYNNESFVIYMFLVHATIPFCVIFFCYGRLVCTVKEAAAQQQESETTQR
                     AEREVTRMVVLMGFAYLVCWLPYASVAWYIFTHKGTEFGPIFMTIPAFFAKTSAVYNP
                     V"
BASE COUNT          143 a          273 c          202 g          213 t
ORIGIN      
        1 cagtactacc tggcgccacc atgggcattc gccgtcctgg ctgcttacat gttcttcctc
       61 attatcaccg gcttccccgt caatttcctc actctgtatg tcaccctcga gcacaagaag
      121 ctgcgtacac ccctcaacta catcctgctg aacctcgccg ttgccgatct cttcatggtg
      181 ttcggtggct tcaccacgac gatgtacacc tcgttgcacg gctacttcgt gttcggacgc
      241 ctcggctgca accttgaggg cttcttcgca accctgggag gtgaaatggc gctttggtcc
      301 attgtcacac tggccattga gaggtggctt gtcgtctgta agcccatcag caacttccgc
      361 ttcggggaga accacgccat catgggcgtc gtcttcacgt gggtcatggc ctgctcctgc
      421 gccgtgccgc cccttctcgg ctggtcccgt tacatcccag agggcatgca gtgctcatgc
      481 ggagtcgact attacactcg cgccgagggc tacaacaacg agtccttcgt catctacatg
      541 tttcttgtcc acgccaccat tcccttctgt gtcattttct tctgctacgg tcgtctggtc
      601 tgcacagtca aagaagccgc tgcccagcag caggagtccg agaccacgca gagggctgag
      661 cgcgaggtca cccgcatggt cgtcctcatg ggcttcgcct acttggtttg ctggctcccc
      721 tacgccagtg tggcctggta catcttcacc cacaagggaa ctgaatttgg gcctatcttc
      781 atgacaattc cagccttctt tgccaagacc tctgctgtct acaacccggt t
//