LOCUS       FJ197058                 831 bp    DNA     linear   VRT 26-JUL-2016
DEFINITION  Pseudorasbora pumila pumila isolate CTOL00479 rhodopsin (RH) gene,
            partial cds.
ACCESSION   FJ197058
VERSION     FJ197058.1
KEYWORDS    .
SOURCE      Pseudorasbora pumila pumila
  ORGANISM  Pseudorasbora pumila pumila
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Mayden,R.L., Chen,W.J., Bart,H.L., Doosey,M.H., Simons,A.M.,
            Tang,K.L., Wood,R.M., Agnew,M.K., Yang,L., Hirt,M.V.,
            Clements,M.D., Saitoh,K., Sado,T., Miya,M. and Nishida,M.
  TITLE     Reconstructing the phylogenetic relationships of the earth's most
            diverse clade of freshwater fishes--order Cypriniformes
            (Actinopterygii: Ostariophysi): a case study using multiple nuclear
            loci and the mitochondrial genome
  JOURNAL   Mol. Phylogenet. Evol. 51 (3), 500-514 (2009)
   PUBMED   19141325
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Chen,W.-J. and Agnew,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Department of Biology, Saint Louis
            University, 3507 Laclede Avenue, Saint Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pseudorasbora pumila pumila"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00479"
                     /sub_species="pumila"
                     /db_xref="taxon:462890"
     gene            <1..>831
                     /gene="RH"
     mRNA            <1..>831
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>831
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACJ83154.1"
                     /translation="QYYLAEPWAFALLAAYMFFLIITGFPVNFLTLYVTLEHKKLRTP
                     LNYILLNLAVADLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMALWSIV
                     TLAIERWLVVCKPISNFRFGENHAIMGVVFTWVMACSCAVPPLLGWSRYIPEGMQCSC
                     GVDYYTRAEGYNNEAFVIYMFIVHATIPFCVIFFCYGRLVCTVKEAAAQQQESETTQR
                     AEREVTRMVVLMGFAYLVCWLPYASVAWYIFTHKGADFGPIFMTIPAFFAKTSAVYNP
                     V"
BASE COUNT          152 a          256 c          203 g          220 t
ORIGIN      
        1 cagtactacc tggcagaacc atgggcattc gccctcctgg ccgcttacat gttctttctc
       61 attatcaccg gcttccccgt caatttcctc actctgtatg tgaccctgga gcacaagaag
      121 ctgcgtaccc cgctcaacta catcctgctg aatctggccg tggccgatct cttcatggtg
      181 ttcggcggct tcaccacgac catgtacact tcgttgcacg gctacttcgt gtttggacgc
      241 ctcggatgca accttgaggg cttcttcgca accctgggtg gtgaaatggc actttggtcc
      301 attgtcacgc tggccattga gaggtggctg gtcgtgtgta agcccatcag caacttccgc
      361 ttcggggaga accacgccat catgggtgta gtcttcacat gggtcatggc ttgctcctgc
      421 gcagttccac ctcttctggg ctggtctcgc tacatccccg aaggcatgca atgctcatgc
      481 ggagtcgact attacactcg tgccgagggc tacaacaacg aggccttcgt catctacatg
      541 tttattgtcc atgccaccat tcccttctgt gtcatcttct tctgctacgg tcgcctggtt
      601 tgcactgtga aagaagcggc tgcccagcaa caggagtccg aaaccacaca gagggctgag
      661 cgtgaagtca cccgcatggt cgtcctcatg ggcttcgcct acttggtgtg ttggctcccc
      721 tatgccagtg tggcctggta catcttcacc cacaagggag ctgattttgg gcctatcttc
      781 atgacaattc cagccttctt tgccaagacc tccgccgtct acaatccagt c
//