LOCUS       FJ197057                 831 bp    DNA     linear   VRT 26-JUL-2016
DEFINITION  Hemibarbus barbus isolate CTOL00385 rhodopsin (RH) gene, partial
            cds.
ACCESSION   FJ197057
VERSION     FJ197057.1
KEYWORDS    .
SOURCE      Hemibarbus barbus
  ORGANISM  Hemibarbus barbus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Hemibarbus-Squalidus clade; Hemibarbus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Mayden,R.L., Chen,W.J., Bart,H.L., Doosey,M.H., Simons,A.M.,
            Tang,K.L., Wood,R.M., Agnew,M.K., Yang,L., Hirt,M.V.,
            Clements,M.D., Saitoh,K., Sado,T., Miya,M. and Nishida,M.
  TITLE     Reconstructing the phylogenetic relationships of the earth's most
            diverse clade of freshwater fishes--order Cypriniformes
            (Actinopterygii: Ostariophysi): a case study using multiple nuclear
            loci and the mitochondrial genome
  JOURNAL   Mol. Phylogenet. Evol. 51 (3), 500-514 (2009)
   PUBMED   19141325
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Chen,W.-J. and Agnew,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Department of Biology, Saint Louis
            University, 3507 Laclede Avenue, Saint Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Hemibarbus barbus"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00385"
                     /db_xref="taxon:80793"
     gene            <1..>831
                     /gene="RH"
     mRNA            <1..>831
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>831
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACJ83153.1"
                     /translation="QYYLAEPWAFACLAAYMFFLIITGFPVNFLTLYVTLEHKKLRTP
                     LNYILLNLAVADLFMVFGGFTTTMYTSLHGYFVFGRLGCNLEGFFATLGGEMALWSIV
                     TLAIERWLVVCKPISNFRFGENHAIMGVVFTWVMACSCAVPPLLGWSRYIPEGMQCSC
                     GVDYYTRAEGYNNESFVIYMFLVHALIPFVVIFFCYGRLVCTVKEAAAQQQESETTQR
                     AEREVTRMVVLMGFAYLVCWLPYASVAWYIFTHKGSSFGPIFMTIPAFFAKTSAVYNP
                     V"
BASE COUNT          146 a          272 c          197 g          216 t
ORIGIN      
        1 cagtactacc tggcggaacc atgggcattt gcctgcctgg ctgcttacat gttcttcctc
       61 attatcaccg gcttccccgt caatttcctc actctgtacg tcacccttga gcacaagaag
      121 ctgcgtacgc ccctcaacta catcctgctg aacctcgccg ttgccgatct cttcatggtg
      181 ttcggtggtt tcaccacaac gatgtacacc tcgttgcacg gctacttcgt gttcggacgc
      241 ctcggctgca acctcgaagg cttcttcgca accctgggtg gtgaaatggc actttggtcc
      301 attgtcacac tggccattga gaggtggctc gtcgtctgta agcccatcag caacttccgc
      361 ttcggcgaga accacgccat catgggtgtc gtcttcacgt gggtcatggc ctgctcctgc
      421 gccgtacctc cccttctcgg ctggtcccgt tacatccccg agggcatgca gtgctcatgc
      481 ggagtcgact attacactcg tgcagagggc tacaacaacg agtccttcgt catctacatg
      541 tttcttgtcc acgccctcat tcccttcgtt gtcatattct tctgctacgg tcgtctggtc
      601 tgcacagtca aagaagccgc tgcccagcag caggagtccg agaccacgca gagggccgag
      661 cgcgaggtca cccgcatggt cgtcctcatg ggcttcgcct atttggtttg ttggctcccc
      721 tacgccagtg tggcctggta catcttcacc cacaagggaa gctcatttgg acccatcttc
      781 atgacaattc cagccttctt tgccaagacc tctgctgtct acaacccggt c
//