LOCUS       FJ197028                 831 bp    DNA     linear   VRT 26-JUL-2016
DEFINITION  Lefua echigonia isolate CTOL00184 rhodopsin (RH) gene, partial cds.
ACCESSION   FJ197028
VERSION     FJ197028.1
KEYWORDS    .
SOURCE      Lefua echigonia
  ORGANISM  Lefua echigonia
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Nemacheilidae; Lefua.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Mayden,R.L., Chen,W.J., Bart,H.L., Doosey,M.H., Simons,A.M.,
            Tang,K.L., Wood,R.M., Agnew,M.K., Yang,L., Hirt,M.V.,
            Clements,M.D., Saitoh,K., Sado,T., Miya,M. and Nishida,M.
  TITLE     Reconstructing the phylogenetic relationships of the earth's most
            diverse clade of freshwater fishes--order Cypriniformes
            (Actinopterygii: Ostariophysi): a case study using multiple nuclear
            loci and the mitochondrial genome
  JOURNAL   Mol. Phylogenet. Evol. 51 (3), 500-514 (2009)
   PUBMED   19141325
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Chen,W.-J. and Agnew,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2008) Department of Biology, Saint Louis
            University, 3507 Laclede Avenue, Saint Louis, MO 63103, USA
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Lefua echigonia"
                     /mol_type="genomic DNA"
                     /isolate="CTOL00184"
                     /db_xref="taxon:149982"
     gene            <1..>831
                     /gene="RH"
     mRNA            <1..>831
                     /gene="RH"
                     /product="rhodopsin"
     CDS             <1..>831
                     /gene="RH"
                     /codon_start=1
                     /product="rhodopsin"
                     /protein_id="ACJ83124.1"
                     /translation="QYYLVAPWAYGCLAAYMFFLIITGFPINFLTLYVTIEHKKLRTP
                     LNYILLNLAIADLFMVFGGFTTTMYTSLHGYFVFGRIGCNLEGFFATLGGEMGLWSLV
                     VLAIERYMVVCKPISNFRFGENHAIMGLAFTWIMACSCAVPPLLGWSRYIPEGMQCSC
                     GVDYYTRAPGINNESFVIYMFIVHFSIPITVIFFCYGRLVCTVKEAAAQQQESETTQR
                     AEREVTRMVVIMVIAFLVCWLPYAGVAWYIFTHQGSEFGPVFMTLPAFFAKTSAVYNP
                     C"
BASE COUNT          161 a          210 c          189 g          271 t
ORIGIN      
        1 cagtactact tggtggcccc atgggcttat ggttgtctgg ctgcttacat gttcttcctc
       61 attatcaccg ggtttcccat caattttctc actctgtacg tcaccattga gcacaagaag
      121 ttacgtacac cgctcaacta tattttgctg aatcttgcca ttgctgacct ttttatggtt
      181 tttggcggtt ttactacaac aatgtacacc tcactgcatg gctactttgt gtttggacgc
      241 attggctgca accttgaagg cttctttgct actctcggtg gtgaaatggg gctgtggtcc
      301 ttggttgtgc tagccatcga gaggtatatg gttgtctgca agcctattag caacttccgc
      361 tttggagaga accatgccat catgggtctt gcttttactt ggataatggc ctgctcctgc
      421 gctgttcctc ccctcctagg ctggtctcgt tacatccctg aaggaatgca gtgctcatgt
      481 ggagttgact actacactcg tgcacccggt atcaacaacg agtcctttgt catctacatg
      541 ttcattgtcc atttttccat tccaattact gttattttct tttgctatgg tcggcttgtc
      601 tgcacagtaa aagaggctgc tgcccagcag caggagtctg agaccactca aagggcagag
      661 cgtgaggtca cccgcatggt tgtaattatg gtcattgctt tcttggtatg ttggctcccc
      721 tatgctggtg tggcctggta tatcttcaca caccagggaa gtgaatttgg acctgtcttc
      781 atgacactgc cagccttctt tgccaagacc tctgcagtct acaatccctg t
//