LOCUS       AB780981                 620 bp    DNA     linear   VRT 04-OCT-2013
DEFINITION  Sarcocheilichthys variegatus variegatus mitochondrial genes for
            cytochrome b, tRNA-Thr, partial cds and partial sequence,
            haplotype: A016.
ACCESSION   AB780981
VERSION     AB780981.1
KEYWORDS    .
SOURCE      mitochondrion Sarcocheilichthys variegatus variegatus
  ORGANISM  Sarcocheilichthys variegatus variegatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Sarcocheilichthyinae; Sarcocheilichthys.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Watanabe,K. and Komiya,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2013) to the DDBJ/EMBL/GenBank databases.
            Contact:Katsutoshi Watanabe
            Graduate School of Science, Kyoto University, Department of
            Zoology, Division of Biological Science; Kitashirakawa-oiwakecho,
            Sakyo, Kyoto, Kyoto 606-8502, Japan
REFERENCE   2  
  AUTHORS   Komiya,T., Fujita-Yanagibayashi,S. and Watanabe,K.
  TITLE     Multiple colonization of Lake Biwa by Sarcocheilichthys fishes and
            their population history
  JOURNAL   Unpublished (2013)
COMMENT     
FEATURES             Location/Qualifiers
     source          1..620
                     /country="Japan:Hiroshima, Fukuyama, Ashida River"
                     /db_xref="taxon:481702"
                     /haplotype="A016"
                     /identified_by="Takefumi Komiya"
                     /mol_type="genomic DNA"
                     /organelle="mitochondrion"
                     /organism="Sarcocheilichthys variegatus variegatus"
                     /sub_species="variegatus"
     CDS             <1..592
                     /codon_start=1
                     /gene="cytb"
                     /note="TAA stop codon is completed by the addition of 3'A
                     residues to the mRNA"
                     /product="cytochrome b"
                     /protein_id="BAN92408.1"
                     /transl_except=(pos:592,aa:TERM)
                     /transl_table=2
                     /translation="LLPFIIAAATIIHLLFLHETGSNNPAGLNSDADKISFHPYFSYK
                     DLLGFVLMLLALTSLALFSPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIP
                     NKLGGVLALLSSILVLMVVPILHTSKQRGLTFRPVTQFLFWALVADMIILTWIGGMPV
                     EHPYVIIGQIASVLYFALFLILIPLAGWLENKALKWA"
     tRNA            593..>620
                     /product="tRNA-Thr"
BASE COUNT          173 a          182 c           92 g          173 t
ORIGIN      
        1 ctacttccat ttattattgc cgccgccacc attatccacc tgctgtttct acacgaaacg
       61 ggctcaaaca acccagccgg gctgaactcc gacgcagata aaatttcttt ccacccgtac
      121 ttctcatata aagaccttct cggctttgta ttaatattat tagccctcac atcattagcc
      181 ctattctccc ccaacctgtt aggagaccca gacaacttta cccccgccaa cccaatagtg
      241 acacccccac atattaagcc ggaatgatac ttcttatttg cctacgccat cctacgatca
      301 attccaaaca aattaggggg agtccttgca ttactatcct ccattctagt actaatagtg
      361 gtcccaattc tccatacctc aaaacagcga ggcctcacat tccgcccagt aactcagttt
      421 ttattctgag ccctggtggc agatataatt atcctaacat gaattggggg tatacccgta
      481 gaacacccat acgttattat tggacaaatc gcatctgtcc tatacttcgc acttttcctc
      541 atccttattc cactagcagg atgactagaa aataaagcac taaaatgagc ttgccctagt
      601 agcttagtct aaaagcatcg
//