LOCUS       AB601465                 620 bp    DNA     linear   VRT 08-JUL-2011
DEFINITION  Sarcocheilichthys variegatus microoculus mitochondrial genes for
            cytochrome b, tRNA-Thr, partial cds and partial sequence,
            haplotype: B002.
ACCESSION   AB601465
VERSION     AB601465.1
KEYWORDS    .
SOURCE      mitochondrion Sarcocheilichthys variegatus microoculus
  ORGANISM  Sarcocheilichthys variegatus microoculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Sarcocheilichthyinae; Sarcocheilichthys.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Komiya,T. and Watanabe,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2010) to the DDBJ/EMBL/GenBank databases.
            Contact:Takefumi Komiya
            Kyoto University, Laboratory of Animal Ecology, Department of
            Zoology, Graduate School of Science; Kitashirakawa-Oiwakecho,
            Sakyo, Kyoto, Kyoto 6068502, Japan
REFERENCE   2  
  AUTHORS   Komiya,T., Fujita,S. and Watanabe,K.
  TITLE     A Novel Resource Polymorphism in Fish, Driven by Differential
            Bottom Environments: An Example from an Ancient Lake in Japan
  JOURNAL   PLoS ONE 6, e17430 (2011)
  REMARK    Publication Status: Online-Only
COMMENT     
FEATURES             Location/Qualifiers
     source          1..620
                     /collected_by="Takefumi Komiya"
                     /collection_date="2002"
                     /country="Japan:Shiga, Nagahama, Kohoku, Onoe, Lake Biwa"
                     /db_xref="taxon:149978"
                     /haplotype="B002"
                     /identified_by="Takefumi Komiya"
                     /mol_type="genomic DNA"
                     /organelle="mitochondrion"
                     /organism="Sarcocheilichthys variegatus microoculus"
                     /PCR_primers="fwd_name: L14724, fwd_seq:
                     tgacttgaaraaccaycgyy, rev_name: H15915, rev_seq:
                     acctccgatctycggattacaagac"
     CDS             <1..592
                     /codon_start=1
                     /gene="cytb"
                     /note="TAA stop codon is completed by the addition of 3'A
                     residues to the mRNA"
                     /product="cytochrome b"
                     /protein_id="BAK24058.1"
                     /transl_except=(pos:592,aa:TERM)
                     /transl_table=2
                     /translation="LLPFIIAAATIIHLLFLHETGSNNPAGLNSDADKISFHPYFSYK
                     DLLGFVLMLLALTSLALFSPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIP
                     NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPVTQFLFWALVADMIILTWIGGMPV
                     EHPYVIIGQIASVLYFSLFLVLIPLAGWLENKALKWA"
     tRNA            593..>620
                     /product="tRNA-Thr"
BASE COUNT          172 a          180 c           91 g          177 t
ORIGIN      
        1 ctacttccat ttattattgc cgccgccacc attatccacc tgctgttttt acacgaaacg
       61 ggctcaaaca acccagccgg gctgaactcc gacgcagata aaatttcttt ccacccgtac
      121 ttctcatata aagaccttct cggctttgta ttaatattat tagccctcac atcattagcc
      181 ctattctccc ccaacctgtt aggagaccca gacaacttta cccccgccaa cccaatagtg
      241 acacccccgc atattaagcc tgaatgatac ttcttatttg cctacgccat cctacgatca
      301 attccaaaca aattaggggg agtccttgca ttactattct ccattctagt actaatagtg
      361 gtcccaattc tccatacctc aaaacaacgg ggcctcacat tccgcccagt aactcagttt
      421 ttattctgag ccctggtggc agatataatt atcctaacat gaattggagg tatacccgta
      481 gaacacccat acgttattat tggacaaatc gcatctgtcc tatacttctc acttttcctc
      541 gtccttattc cactagcagg atgactagaa aataaagcac taaaatgagc ttgccctagt
      601 agcttagtct aaaagcatcg
//