LOCUS AK303290 3877 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ57023 complete cds, highly similar to Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 3, mRNA. ACCESSION AK303290 VERSION AK303290.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3877) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..3877 /clone="THYMU3001811" /clone_lib="THYMU3" /db_xref="H-InvDB:HIT000497914" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="thymus" CDS 253..3876 /codon_start=1 /note="highly similar to Homo sapiens collagen, type VI, alpha 3 (COL6A3), transcript variant 3, mRNA" /protein_id="BAG64366.1" /transl_table=1 /translation="MRKHRHLPLVAVFCLFLSGFPTTHAQQQQAVIEVNKRDIVFLVD GSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVI TAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDEISQ PAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLR TLSGTPEESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNLKPEGTRIAVAQYSDD VKVESRFDEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVL QFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESL PKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVES LDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFV LRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADIT EMQTISFIPDFAVAIPTFRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGK RDVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAH SSKDEVQNAVQRLRPKGGRQINVGNALEYVSGNIFKRPLGSRIEEGVPQFLVLISSGK SDDEVDDPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSLEQKLL TPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIV RRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALE FVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVVRSSGIVSLGVGDRNID RTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKK ADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKD FSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGG KSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEI STF" BASE COUNT 888 a 1021 c 1125 g 843 t ORIGIN 1 ggtggagctc agtcttccac caaaggccgt tcagttctcc tgggctccag cctcctgcaa 61 ggactgcaag agttttcctc cgcagctctg agtctccact tttttggtgg agaaaggctg 121 caaaaagaaa aagagacgca gtgagtggga aaagtatgca tcctattcaa acctaattga 181 atcgaggagc ccagggacac acgccttcag gtttgctcag gggttcatat ttggtgctta 241 gacaaattca aaatgaggaa acatcggcac ttgcccttag tggccgtctt ttgcctcttt 301 ctctcaggct ttcctacaac tcatgcccag cagcagcaag cagtcattga agtcaacaag 361 agagacatag tcttcctggt ggatggctca tctgcactgg gactggccaa cttcaatgcc 421 atccgagact tcattgctaa agtcatccag aggctggaaa tcggacagga tcttatccag 481 gtggcagtgg cccagtatgc agacactgtg aggcctgaat tttatttcaa tacccatcca 541 acaaaaaggg aagtcataac cgctgtgcgg aaaatgaagc ccctggacgg ctcggccctg 601 tacacgggct ctgctctaga ctttgttcgt aacaacctat tcacgagttc agccggctac 661 cgggctgccg aggggattcc taagcttttg gtgctgatca caggtggtaa gtccctagat 721 gaaatcagcc agcctgccca ggagctgaag agaagcagca taatggcctt tgccattggg 781 aacaagggtg ccgatcaggc tgagctggaa gagatcgctt tcgactcctc cctggtgttc 841 atcccagctg agttccgagc cgccccattg caaggcatgc tgcctggctt gctggcacct 901 ctcaggaccc tctctggaac ccctgaagag agcaagcgag acattctgtt cctctttgac 961 ggctcagcca atcttgtggg ccagttccct gttgtccgtg actttctcta caagattatc 1021 gatgagctca atttgaagcc agaggggacc cgaattgcgg tggctcagta cagcgatgat 1081 gtcaaggtgg agtcccgttt tgatgagcac cagagtaagc ctgagatcct gaatcttgtg 1141 aagagaatga agatcaagac gggcaaagcc ctcaacctgg gctacgcgct ggactatgca 1201 cagaggtaca tttttgtgaa gtctgctggc agccggatcg aggatggagt gcttcagttc 1261 ctggtgctgc tggtcgcagg aaggtcatct gaccgtgtgg atgggccagc aagtaacctg 1321 aagcagagtg gggttgtgcc tttcatcttc caagccaaga acgcagaccc tgctgagtta 1381 gagcagatcg tgctgtctcc agcgtttatc ctggctgcag agtcgcttcc caagattgga 1441 gatcttcatc cacagatagt gaatctctta aaatcagtgc acaacggagc accagcacca 1501 gtttcaggtg aaaaggacgt ggtgtttctg cttgatggct ctgagggcgt caggagcggc 1561 ttccctctgt tgaaagagtt tgtccagaga gtggtggaaa gcctggatgt gggccaggac 1621 cgggtccgcg tggccgtggt gcagtacagc gaccggacca ggcccgagtt ctacctgaat 1681 tcatacatga acaagcagga cgtcgtcaac gctgtccgcc agctgaccct gctgggaggg 1741 ccgaccccca acaccggggc cgccctggag tttgtcctga ggaacatcct ggtcagctct 1801 gcgggaagca ggataacaga aggtgtgccc cagctgctga tcgtcctcac ggccgacagg 1861 tctggggatg atgtgcggaa cccctccgtg gtcgtgaaga ggggtggggc tgtgcccatt 1921 ggcattggca tcgggaacgc tgacatcaca gagatgcaga ccatctcctt catcccggac 1981 tttgccgtgg ccattcccac ctttcgccag ctggggaccg tccaacaggt catctctgag 2041 agggtgaccc agctcacccg cgaggagctg agcaggctgc agccggtgtt gcagcctcta 2101 ccgagcccag gtgttggtgg caagagggac gtggtctttc tcatcgatgg gtcccaaagt 2161 gccgggcctg agttccagta cgttcgcacc ctcatagaga ggctggttga ctacctggac 2221 gtgggctttg acaccacccg ggtggctgtc atccagttca gcgatgaccc caaggtggag 2281 ttcctgctga acgcccattc cagcaaggat gaagtgcaga acgcggtgca gcggctgagg 2341 cccaagggag ggcggcagat caacgtgggc aatgccctgg agtacgtgtc cgggaacatc 2401 ttcaagaggc ccctggggag ccgcattgaa gagggcgtcc cgcagttcct ggtcctcatc 2461 tcgtctggaa agtctgacga tgaggtggac gacccggcgg tggagctcaa gcagtttggc 2521 gtggcccctt tcacgatcgc caggaacgca gaccaggagg agctggtgaa gatctcgctg 2581 agccccgaat atgtgttctc ggtgagcacc ttccgggagc tgcccagtct ggagcagaaa 2641 ctgctgacgc ccatcacgac cctgacctca gagcagatcc agaagctctt agccagcact 2701 cgctatccac ctccagcagt tgagagtgat gctgcagaca ttgtctttct gatcgacagc 2761 tctgagggag ttaggccaga tggctttgca catattcgag attttgttag caggattgtt 2821 cgaagactca acatcggccc cagtaaagtg agagttgggg tcgtgcagtt cagcaatgat 2881 gtcttcccag aattctatct gaaaacctac agatcccagg ccccggtgct ggacgccata 2941 cggcgcctga ggctcagagg ggggtcccca ctgaacactg gcaaggctct cgaatttgtg 3001 gcaagaaacc tctttgttaa gtctgcgggg agtcgcatag aagacggggt gccccaacac 3061 ctggtcctgg tcctgggtgg aaaatcccag gacgatgtgt ccaggttcgc ccaggtggtc 3121 cgttcctcgg gcattgtgag tttaggggta ggagaccgga acatcgacag aacagagctg 3181 cagaccatca ccaatgaccc cagactggtc ttcacagtgc gagagttcag agagcttccc 3241 aacatagaag aaagaatcat gaactcgttt ggaccctccg cagccactcc tgcacctcca 3301 ggggtggaca cccctcctcc ttcacggcca gagaagaaga aagcagacat tgtgttcctg 3361 ttggatggtt ccatcaactt caggagggac agtttccagg aagtgcttcg ttttgtgtct 3421 gaaatagtgg acacagttta tgaagatggc gactccatcc aagtggggct tgtccagtac 3481 aactctgacc ccactgacga attcttcctg aaggacttct ctaccaagag gcagattatt 3541 gacgccatca acaaagtggt ctacaaaggg ggaagacacg ccaacactaa ggtgggcctt 3601 gagcacctgc gggtaaacca ctttgtgcct gaggcaggca gccgcctgga ccagcgggtc 3661 cctcagattg cctttgtgat cacgggagga aagtcggtgg aagatgcaca ggatgtgagc 3721 ctggccctca cccagagggg ggtcaaagtg tttgctgttg gagtgaggaa tatcgactcg 3781 gaggaggttg gaaagatagc gtccaacagc gccacagcgt tccgcgtggg caacgtccag 3841 gagctgtccg aactgagcga gatcagtact ttttaat //