LOCUS AK299150 2656 bp mRNA linear HUM 24-JUL-2008 DEFINITION Homo sapiens cDNA FLJ59393 complete cds, highly similar to Procollagen-lysine,2-oxoglutarate5-dioxygenase 1 precursor (EC 1.14.11.4). ACCESSION AK299150 VERSION AK299150.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2656) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project focused on splicing variants JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2656 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RP2003927" /clone_lib="NT2RP2" /db_xref="H-InvDB:HIT000493774" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction." /organism="Homo sapiens" CDS 47..2371 /codon_start=1 /note="highly similar to Procollagen-lysine,2-oxoglutarate5-dioxygenase 1 precursor (EC 1.14.11.4)" /protein_id="BAG61199.1" /transl_table=1 /translation="MRPLLLLALLGWLLLAEAKGDAKPEAPCCQEGLRAGGSGSLHLG RDFTVLAGARGSPSPSVSSIPRFWIPGSDNLLVLTVATKETEGFRRFKRSAQFFNYKI QALGLGEDWNVEKGTSAGGGQKVRLLKKALEKHADKEDLVILFADSYDVLFASGPREL LKKFRQARSQVVFSAEELIYPDRRLETKYPVVSDGKRFLGSGGFIGYAPNLSKLVAEW EGQDSDSDQLFYTKIFLDPEKREQINITLDHRCRIFQNLDGALDEVVLKFEMGHVRAR NLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRSLKGIGDEALPT VLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFIHNHEQHHKAQVEEFLAQHGSEYQ SVKLVGPEVRMANADARNMGADLCRQDRSCTYYFSVDADVALTEPNSLRLLIQQNKNV IAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVWNVPYISNIYLIKGSA LRGELQSSDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHTLGHLLSLDSYRTTHLHND LWEVFSNPEDWKEKYIHQNYTKALAGKLVETPCPDVYWFPIFTEVACDELVEEMEHFG QWSLGNNKDNRIQGGYENVPTIDIHMNQIGFEREWHKFLLEYIAPMTEKLYPGYYTRA QFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNRVGVDYEGGGCRFLRYNCSIRAPR KGWTLMHPGRLTHYHEGLPTTRGTRYIAVSFVDP" BASE COUNT 544 a 812 c 770 g 530 t ORIGIN 1 actgcgagcg ccgccgggtc ggccgatcgt cccccatacc tcggccatgc ggcccctgct 61 gctactggcc ctgctgggct ggctgctgct ggccgaagcg aagggcgacg ccaagccgga 121 ggccccctgt tgccaagagg gcctcagagc tggtggctct ggttctcttc acctggggag 181 agacttcacc gtcctggcag gagctcgggg gagcccttcc ccaagtgtga gcagcatccc 241 tcgtttctgg atcccaggtt cagacaacct tttagtcctc acggtggcca ctaaggagac 301 cgagggattc cgtcgcttca agcgctcagc tcagttcttc aactacaaga tccaggcgct 361 tggcctaggg gaggactgga atgtggagaa ggggacgtcg gcaggtggag ggcagaaggt 421 ccggctgctg aagaaagctc tggagaagca cgcagacaag gaggatctgg tcattctctt 481 cgcagacagc tatgacgtgc tgtttgcatc ggggccccgg gagctcctga agaagttccg 541 gcaggccagg agccaggtgg tcttctctgc tgaggagctc atctacccag accgcaggct 601 ggagaccaag tatccggtgg tgtccgatgg caagaggttc ctgggctctg gaggcttcat 661 cggttatgcc cccaacctca gcaaactggt ggccgagtgg gagggccagg acagcgacag 721 cgatcagctg ttttacacca agatcttctt ggacccggag aagagggagc agatcaatat 781 caccctggac caccgctgcc gtatcttcca gaacctggat ggagccttgg atgaggtcgt 841 gctcaagttt gaaatgggcc atgtgagagc gaggaacctg gcctatgaca ccctcccggt 901 cctgatccat ggcaacgggc caaccaagct gcagttgaac tacctgggca actacatccc 961 gcgcttctgg accttcgaaa caggctgcac cgtgtgtgac gaaggcttgc gcagcctcaa 1021 gggcattggg gatgaagctc tgcccacggt cctggtcggc gtgttcatcg aacagcccac 1081 gccgtttgtg tccctgttct tccagcggct cctgcggctc cactaccccc agaaacacat 1141 gcgacttttc atccacaacc acgagcagca ccacaaggct caggtggaag agttcctggc 1201 acagcatggc agcgagtacc agtctgtgaa gctggtgggc cctgaggtgc ggatggcgaa 1261 tgcagatgcc aggaacatgg gcgcagacct gtgccggcag gaccgcagct gcacctacta 1321 cttcagcgtg gatgctgacg tggccctgac cgagcccaac agcctgcggc tgctgatcca 1381 acagaacaag aacgtcattg ccccgctgat gacccggcat gggaggctgt ggtcgaactt 1441 ctggggggct ctcagtgcag atggctacta tgcccgttcc gaggactacg tggacattgt 1501 gcaggggcgg cgtgttggtg tctggaatgt gccctatatt tcaaacatct acttgatcaa 1561 gggcagtgcc ctgcggggtg agctgcagtc ctcagatctc ttccaccaca gcaagctgga 1621 ccccgacatg gccttctgtg ccaacatccg gcagcaggat gtgttcatgt tcctgaccaa 1681 ccggcacacc cttggccatc tgctctccct agacagctac cgcaccaccc acctgcacaa 1741 cgacctctgg gaggtgttca gcaaccccga ggactggaag gagaagtaca tccaccagaa 1801 ctacaccaaa gccctggcag ggaagctggt ggagacgccc tgcccggatg tctattggtt 1861 ccccatcttc acggaggtgg cctgtgatga gctggtggag gagatggagc actttggcca 1921 gtggtctctg ggcaacaaca aggacaaccg catccagggt ggctacgaga acgtgccgac 1981 tattgacatc cacatgaacc agatcggctt tgagcgggag tggcacaaat tcctgctgga 2041 gtacattgcg cccatgacgg agaagctcta ccccggctac tacaccaggg cccagtttga 2101 cctggccttt gtcgtccgct acaagcctga tgagcagccc tcactgatgc cacaccatga 2161 tgcctccacc ttcaccatca acatcgccct gaaccgagtc ggggtggatt acgagggcgg 2221 gggctgtcgg ttcctgcgct acaactgttc catccgagcc ccaaggaagg gctggaccct 2281 catgcaccct ggacgactca cgcattacca tgaggggctc cccaccacca ggggcacccg 2341 ctacatcgca gtctccttcg tcgatcccta attggccagg cctgaccctc ttggaccttt 2401 cttctttgcc gacaaccact gcccagcagc ctctgggacc tcggggtccc agggaaccca 2461 gtccagcctc ctggctgttg acttcccatt gctcttggag ccaccaatca aagagattca 2521 aagagattcc tgcaggccag aggcggaaca cacctttatg gctggggctc tccgtggtgt 2581 tctggaccca gcccctggag acaccattca cttttactgc tttgtagtga ctcgtgctct 2641 ccaacctgtc ttcctg //