LOCUS       AK296613                1512 bp    mRNA    linear   HUM 31-JUL-2008
DEFINITION  Homo sapiens cDNA FLJ52646 complete cds, highly similar to HLA
            class II histocompatibility antigen, DQB1*0602 beta chain
            precursor.
ACCESSION   AK296613
VERSION     AK296613.1
KEYWORDS    FLI_CDNA; oligo capping.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Isogai,T. and Yamamoto,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
            Contact:Takao Isogai
            Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
            Chiyoda-ku, Tokyo 101-0044, Japan
            E-mail :flj-cdna@nifty.com
REFERENCE   2  
  AUTHORS   Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
            Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
            Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
            Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
  TITLE     NEDO human cDNA sequencing project focused on splicing variants
  JOURNAL   Unpublished (2007)
COMMENT     Human cDNA sequencing project focused on splicing variants of mRNA
            in NEDO functional analysis of protein and research application
            project supported by Ministry of Economy, Trade and Industry,
            Japan; cDNA selection for complete cds sequencing: Reverse
            Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
            (Hitachi) and Japan Biological Informatics Consortium, Japan
            (JBIC); cDNA complete cds sequencing: JBIC; cDNA library
            construction: Helix Research Institute supported by Japan Key
            Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
            Research Association for Biotechnology, Japan, Biotechnology
            Center, National Institute of Technology and Evaluation, Japan and
            HRI; cDNA mapping to human genome: Central Research Laboratory,
            Hitachi; evaluation and annotation: REPRORI.
FEATURES             Location/Qualifiers
     source          1..1512
                     /clone="COLON2003508"
                     /clone_lib="COLON2"
                     /db_xref="H-InvDB:HIT000491237"
                     /db_xref="taxon:9606"
                     /mol_type="mRNA"
                     /note="cloning vector: pME18SFL3"
                     /organism="Homo sapiens"
                     /tissue_type="colon"
     CDS             62..847
                     /codon_start=1
                     /note="highly similar to HLA class II histocompatibility
                     antigen, DQB1*0602 beta chain precursor"
                     /protein_id="BAG59223.1"
                     /transl_table=1
                     /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFK
                     GMCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEG
                     TRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIK
                     VRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV
                     EWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH"
BASE COUNT          340 a          388 c          413 g          371 t
ORIGIN      
        1 acatcagatc catcaggtcc gagctgtgtt gactaccact gcttttccct tcgtctcagt
       61 tatgtcttgg aagaaggctt tgcggatccc cggagacctt cgggtagcaa ctgtcacctt
      121 gatgctggcg atgctgagct ccctactggc tgagggcaga gactctcccg aggatttcgt
      181 gtaccagttt aagggcatgt gctacttcac caacgggacg gagcgcgtgc gtcttgtaac
      241 cagacacatc tataaccgag aggagtacgc gcgcttcgac agcgacgtgg gggtgtaccg
      301 cgcggtgacg ccgcaggggc ggcctgatgc cgagtactgg aacagccaga aggaagtcct
      361 ggaggggacc cgggcggagt tggacacggt gtgcagacac aactacgagg tggcgttccg
      421 cgggatcttg cagaggagag tggagcccac agtgaccatc tccccatcca ggacagaggc
      481 cctcaaccac cacaacctgc tggtctgctc ggtgacagat ttctatccag gccagatcaa
      541 agtccggtgg tttcggaatg atcaggagga gacagccggc gttgtgtcca ccccccttat
      601 taggaatggt gactggactt tccagatcct ggtgatgctg gaaatgactc cccagcgtgg
      661 agatgtctac acctgccacg tggagcaccc cagcctccag agccccatca ccgtggagtg
      721 gcgggctcag tctgaatctg cccagagcaa gatgctgagt ggcgttggag gcttcgtgct
      781 ggggctgatc ttccttgggc tgggccttat catccgtcaa aggagtcaga aagggcttct
      841 gcactgactc ctgagactat tttaactagg attggttatc actcttctgt gatgcctgct
      901 tgtgcctgcc cagaattccc agctgcctgt gtcagcttgt ccccctgaga tcaaagtcct
      961 acagtggctg tcacgcagcc accaggtcat ctcctttcat ccccacccca aggcgctggc
     1021 tgtgactctg cttcctgcac tgacccagag cctctgcctg tgcatggcca gctgcgtcta
     1081 ctcaggtccc aaggggtttc tgtttctatt ctttcctcag actgctcaag agaagcacat
     1141 gaaaaacatt acctgacttt agagcttttt tacataatta aacatgatcc tgagttatct
     1201 gtattctgaa ctttcttaat tgagaagagg caggaaatca ctgcagaatg aaggaacatc
     1261 ccttgaggtg acccagcaaa cctgtggcca gaaggaggat tgtaccttga aaagacactg
     1321 aaagcatttt ggggtgtgaa gtaagggtgg gcagaggagg tagaaaataa ttcaattgtc
     1381 gcatcattca tggttcttta atactgatgc tcagtgcatt ggccttagaa tatcccagcc
     1441 tctcttctgg tttggtgagt gctgtgtaaa taagcatggt agaattgttt ggagacatat
     1501 atagtgatcc tt
//