LOCUS AK290211 2888 bp mRNA linear HUM 09-JAN-2008 DEFINITION Homo sapiens cDNA FLJ77277 complete cds, highly similar to Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 1, mRNA. ACCESSION AK290211 VERSION AK290211.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2888) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2888 /clone="BRTHA3018192" /clone_lib="BRTHA3" /db_xref="H-InvDB:HIT000423008" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="thalamus" CDS 589..2715 /codon_start=1 /note="highly similar to Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 1, mRNA" /protein_id="BAF82900.1" /transl_table=1 /translation="MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQ TLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPD VSCKRFLDQLVGFFNFYNGPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSL WNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRT APQEQRLPTGGDAPQEHGAALPPNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGL QDGSAQHHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLE SIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHV PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHS SQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLEC SSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLMLSLLAEEPLLGDSA AIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTYYDRIQSLLMANLPQVATP HDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYFQQLAPAARSSGF PNPQDGAFSLSGKAKQKLLKHGVNLL" BASE COUNT 715 a 778 c 744 g 651 t ORIGIN 1 ctctctgccg cgcgcgcagg tacggggcag aagtcgcagg tacccagctg ctgcccacat 61 ttctggtcca gagtcccgaa ccccgagcac tgggatgcct ggctactccg agccaaggca 121 ctgatgtttg aactggaaac ttcaaaacgt ttaataagag tcttcaggat gggtttgaac 181 tagacaagct agaaatttct ttagaacacc agctctagca tgcatctccc acttttggct 241 ttcctggaga ggagcttgaa gaggtggttc tgcagacagc cacagtgata ctcaggaaac 301 cagaggaatg gatttgactt ttctgctagg attctttgtt atagtttctc cctgagttgt 361 aagaggcatg gaaatataca tgaaactgaa gaacctgcaa ggaagggaag tggaactttc 421 catgctgagt gaaaactaac caagtggcag ttgtgactga aaacactgaa acctaccacg 481 tccagattca ctggattggg ggatagagga acggtcacag ctagggagaa agaagtgata 541 ccggaaaaga aaacctaaat gaagagaatg aggatgactg cacagtagat ggccacctct 601 acctccacag aggcaaagtc agcctcgtgg tggaattatt tttttcttta tgatggttcc 661 aaggtaaagg aagaaggcga tccaacaaga gctggcattt gttactttta tccttcccag 721 accctgctag accaacagga gttgctttgt ggacagattg ctggagttgt ccgctgtgtt 781 tctgacattt ctgactctcc tcctactctt gttcgtctga gaaaactgaa gtttgccata 841 aaagttgatg gagattacct ttgggtgctg ggctgtgctg tggagctccc tgatgtcagc 901 tgcaagcggt ttctggatca gctagttgga ttctttaatt tttacaatgg acctgtttcc 961 ctagcttatg agaactgttc tcaggaagaa ctgagcacgg agtgggacac cttcatcgag 1021 caaattctga aaaacaccag tgatctgcat aagattttca attccctctg gaacttggac 1081 caaactaaag tggagcccct gttgttgctg aaggcagccc gcattctgca gacctgccag 1141 cgctcgcctc acattctcgc tggctgcatc ctctataaag gactgattgt cagcacccaa 1201 ctcccgccct ccctcaccgc caaggtcctg cttcaccgaa cagcacctca ggagcagaga 1261 ctccctacgg gaggggatgc cccgcaggaa catggagcgg cattgccccc gaatgtccag 1321 attatccctg tttttgtgac caaagaggaa gccattagtc tccacgagtt cccggtggaa 1381 cagatgacaa ggtctctagc atctccagca ggactccagg atggttcagc ccagcaccat 1441 ccaaagggtg ggagcacatc tgccctgaaa gaaaacgcca ctggccatgt ggaatccatg 1501 gcctggacca ccccagatcc cacatcccct gacgaagctt gtccagatgg caggaaggag 1561 aacggatgct tgtctggcca tgatctggag agcatcaggc ccgcaggact gcacaactct 1621 gccaggggtg aggttcttgg cctcagctcc tccctgggga aggaactagt ctttctccaa 1681 gaagaactcg acttgtctga aatccacatt ccagaggctc aggaagtgga aatggcctca 1741 ggtcattttg ccttcctaca tgtgcctgtt ccagatggca gggctcctta ctgcaaggca 1801 tctctcagcg cctccagcag cctggaaccc acgcctcctg aggacacagc catcagcagc 1861 ttgcgccctc cctctgctcc tgagatgctg acccagcatg gagcccaaga gcagctcgaa 1921 gaccatcctg gccatagcag ccaagccccc attcccagag cagaccctct ccccagaagg 1981 acccgcaggc ccttgttatt gcctcgctta gatccaggac agagaggaaa caagcttccc 2041 acgggggaac aaggcctgga tgaggatgtt gatggggtct gtgaaagcca cgcagcccct 2101 ggtctggaat gcagttcagg ctcagcaaac tgtcagggtg ctggcccctc tgcagatgga 2161 atcagctcca ggctgacacc agcagagtcc tgcatggggc tcgtgaggat gaatctctac 2221 actcactgcg tcaaagggct gatgctgtcc ctgctggctg aggagccgct gctgggagac 2281 agcgcagcca tagaggaagt gtaccacagc agcctggctt cactgaatgg gctggaagtc 2341 cacctgaaag agacgctgcc cagggatgag gcagcctcca cgagcagcac ctacaacttc 2401 acatattacg accgcattca gagcttgctg atggcaaacc tgccgcaggt ggccaccccg 2461 catgatcgcc gcttcctcca ggccgtcagc ctgatgcata gcgaatttgc ccagctgccc 2521 gcgctttatg aaatgactgt cagaaatgcc tccacggctg tgtacgcctg ttgcaacccc 2581 atccaggaga catatttcca gcagctggca cctgcagcac ggagctccgg cttcccaaac 2641 cctcaggatg gcgccttcag cctctccggc aaagcaaagc agaagctgct gaagcacggg 2701 gtgaacttgc tctgaactgc acccaggagg tgactgggaa ggagaaaacc agcaaaggaa 2761 gctctgcctt ttataattga aaaggcccct ctattttatt tttcttgaaa acattccctt 2821 ttttaggaac caaatgatat ttgagttttt gttattcctt ttgcagattg ggatgtgttt 2881 tgggggca //