LOCUS X15855 1810 bp DNA linear PLN 14-NOV-2006
DEFINITION Tomato anther specific LAT52 gene.
ACCESSION X15855
VERSION X15855.1
KEYWORDS glycoprotein; LAT52 gene.
SOURCE Solanum lycopersicum (tomato)
ORGANISM Solanum lycopersicum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
Solanoideae; Solaneae; Solanum; Lycopersicon.
REFERENCE 1 (bases 1 to 1810)
AUTHORS Twell D., Wing R., Yamaguchi J., McCormick S.
TITLE Isolation and expression of an anther-specific gene from tomato
JOURNAL Mol. Gen. Genet. 217(2-3), 240-245(1989).
PUBMED 2770694
COMMENT Author reports intron to be composed almost entirely of a directly
repeated sequence of 46 nucleotides.
Data kindly reviewed (07-NOV-1989) by McCormick S.
FEATURES Location/Qualifiers
source 1..1810
/organism="Solanum lycopersicum"
/mol_type="genomic DNA"
/clone_lib="lambda gt10"
/clone="pLAT52"
/db_xref="taxon:4081"
repeat_region 39..48
/note="direct repeat 1"
repeat_region 119..126
/note="direct repeat 2"
repeat_region 306..315
/note="direct repeat 1"
repeat_region 418..423
/note="direct repeat 3"
repeat_region 461..468
/note="direct repeat 2"
repeat_region 514..519
/note="direct repeat 3"
regulatory 529..532
/regulatory_class="TATA_box"
regulatory 548..551
/regulatory_class="TATA_box"
precursor_RNA 557..1782
/note="altern. major transcript"
precursor_RNA 557..1757
/note="major transcript"
CDS join(667..820,1279..1610)
/gene="LAT52"
/db_xref="GOA:P13447"
/db_xref="InterPro:IPR006040"
/db_xref="InterPro:IPR006041"
/db_xref="UniProtKB/Swiss-Prot:P13447"
/protein_id="CAA33854.1"
/translation="MAKAIVLLSALCILALANFAHCRPEVFDVEGKVYCDTCRVQFET
KLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSP
REDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEALDELGLFPLE
F"
exon 667..820
/number=1
intron 821..1278
/number=1
exon 1279..1757
/number=2
regulatory 1645..1650
/regulatory_class="polyA_signal_sequence"
regulatory 1680..1685
/regulatory_class="polyA_signal_sequence"
polyA_site 1757..1757
polyA_site 1782..1782
BASE COUNT 581 a 305 c 268 g 656 t
ORIGIN
1 cctatacccc ttggataagg gtagctctat ctatatagtc aattattgtc ttctgtctgt
61 tggtgtcgac atactcgact cagaaggtat tgaggaatga tcgattctgg gtcatttgtg
121 tggttaatca ccctccaaat caactaagtc atcctgaagg acaatatcct attttttctc
181 tcgtaggttt atcatttaaa ttactatcgc gtgataattt tgtaacgtag aaaaataata
241 ccattaatcc aaacgttata ttcattaaaa taattatgat acatttaaaa atatttcgtg
301 acctctcaat tattgcaaat tctaagccat cccaagtttt gaggctaatt ttttttacta
361 tactattttt acaaccacaa aaacataaaa aataaaaaat aaaaaaaata aaccgagtca
421 attgctacaa tcacttcatt attaatttta attaatatta tgtggttata tatgaaactg
481 ttagagaaat aatagctcca ccatattttt ttctcaattt attttcacta taaaaaggct
541 atttcattat aatcaaaaca agacacacac aaagagaagg agcaataaaa taaaagtaaa
601 caacaatttg tgtgtttaaa aaaaaaaaaa aagtacacac accaaaaaaa aaaattccaa
661 tttaaaatgg caaaggctat tgtgctcctc tctgctcttt gcattttggc ccttgccaat
721 tttgcacatt gccgccctga agtttttgat gttgaaggaa aggtctactg tgatacttgc
781 cgcgttcaat tcgaaacaaa actcagcgag aaccttgaag gtatatacta tattttcatt
841 cacttcgttc tatcagactc atttcatctt atatatattt acattcactt tgttctattc
901 aggctcattt catcttatat aaatttacat tcacttcgtt ctattcaggc tcatttcatc
961 ttatgtatat ttacattcac ttagttctat tcaggctcat ttcatcttat atatatttac
1021 attcacttcg ttctattcag actcatttca tcttatatat atttacattc actttgtttt
1081 attcagactc atttcatctt atataaattt acattcactt cgttctattc aggctcattt
1141 catcttatgt atatttacat tcacttcgtt ctattcagac tcatttcatc ttatatatat
1201 atacattcac tttgttctat tcagactcat ttcatctaat aactccgtat tgattatgtt
1261 ttgttttgtt gcaaataggt gcaactgtga agttgcaatg caggaacatc agcacagagg
1321 ctgagacgtt ttcagtggaa ggtgtgactg ataaagatgg caagtacaaa ttaaccgtta
1381 atggagacca cgagaacgat atttgcgagg tgacagttgt gaaaagccca agggaggact
1441 gcaaagagag tgtgtctgga tatgaaaagg caagaattga gtgtagtgac aatgttggta
1501 tccacaatgc tgtgagattt gccaatccac ttttcttcat gaaggctgag tctgttcaag
1561 gatgcaaaga agctcttgat gagttgggtt tattccccct tgaattctaa aaaagtcttt
1621 ttcttttttt ttaacgtgac agaaaataaa ttagtccttt tcatgttgta atgcgaaata
1681 ataaaaatat gaggaaaaga tggatttctc atttatatgt attcatatgg gatgataagt
1741 tccatgtatt tgtttttaat gagaagatct tgatcatatt taagaaacta tgttctcttc
1801 ttggtgtttg
//