LOCUS X03613 3028 bp mRNA linear PLN 22-JUL-2008 DEFINITION Maize mRNA for phosphoenolpyruvate carboxylase (PEPCase EC 4.1.1.31). ACCESSION X03613 Z00025 VERSION X03613.1 KEYWORDS phosphoenolpyruvate carboxylase. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 3027) AUTHORS Izui K., Ishijima S., Yamaguchi Y., Katagiri F., Murata T., Shigesada K., Sugiyama T., Katsuki H. TITLE Cloning and sequence analysis of cDNA encoding active phosphoenolpyruvate carboxylase of the C4-pathway from maize JOURNAL Nucleic Acids Res. 14(4), 1615-1628(1986). PUBMED 3005978 REFERENCE 2 (bases 3 to 3028) AUTHORS Izui K. JOURNAL Submitted (04-FEB-1986) to the INSDC. REFERENCE 3 (bases 1 to 145) AUTHORS Yanagisawa S., Izui K., Yamaguchi Y., Shigesada K., Katsuki H. TITLE Further analysis of cDNA clones for maize phosphoenolpyruvate carboxylase involved in C4 photosynthesis. Nucleotide sequence of entire open reading frame and evidence for polyadenylation of mRNA at multiple sites in vivo JOURNAL FEBS Lett. 229(1), 107-110(1988). PUBMED 2894322 REFERENCE 4 AUTHORS Besnard G., Offmann B., Robert C., Rouch C., Cadet F. TITLE Assessment of the C(4) phosphoenolpyruvate carboxylase gene diversity in grasses (Poaceae) JOURNAL Theor Appl Genet 105(2-3), 404-412(2002). PUBMED 12582545 REFERENCE 5 AUTHORS Besnard G., Pincon G., D'Hont A., Hoarau J.Y., Cadet F., Offmann B. TITLE Characterisation of the phosphoenolpyruvate carboxylase gene family in sugarcane (Saccharum spp.) JOURNAL Theor Appl Genet 107(3), 470-478(2003). PUBMED 12759729 COMMENT A stretch of about 80 nucleotides 5' to this sequence are also presented in [1]. It consists of the 5'-flanking sequence from the second translation initiation module of the vector and the poly(dG) tract used for ligation. see x07546 for 3' end of pM52-related cDNA clone pM530 Data kindly reviewed (27-AUG-1986) by K. Izui FEATURES Location/Qualifiers source 1..3028 /organism="Zea mays" /mol_type="mRNA" /clone="pM52" /db_xref="taxon:4577" CDS <1..2809 /codon_start=2 /product="PEPCase" /note="putative" /db_xref="GOA:P04711" /db_xref="InterPro:IPR015813" /db_xref="InterPro:IPR018129" /db_xref="InterPro:IPR021135" /db_xref="InterPro:IPR022805" /db_xref="InterPro:IPR033129" /db_xref="PDB:1JQO" /db_xref="PDB:5VYJ" /db_xref="UniProtKB/Swiss-Prot:P04711" /protein_id="CAA27270.1" /translation="EYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTK LGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSKLKKGGFADEGSA TTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRN CLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQDEMRYGMSYIHETVW KGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLA RMMAANLYIDQIEELMFELSMWRCNDDVRVRAEELHSSSGSKVTKYYIEFWKQIPPNE PYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCG DKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWSEDK RQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDV LAVELLQRECGVRPAVPVVPLFERLASLQLRPASVERLFSVDWYMDRIKGKQQVMVGY SDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQ PPDTINGSIRVTVQGEVIEFCFGEEHLSFQTLQRFTAATLEHGMHPPVSPKPEWRKLM DEMAVVATEEYRSVVVKEPRFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAI PWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVF AKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGL VLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFADENKPAGLVKLNPASEYPP GLEDTLILTMKGIRAGMQNTG" old_sequence 9..10 /note="au was aug in [1]" /citation=[1] regulatory 3005..3009 /note="putative" /regulatory_class="polyA_signal_sequence" regulatory 3008..3012 /note="putative" /regulatory_class="polyA_signal_sequence" misc_difference 3013 /replace="a" /note="conflict" /citation=[3] polyA_site 3028 BASE COUNT 632 a 936 c 894 g 566 t ORIGIN 1 cgagtacgat gcgctgctcg tcgaccgctt cctcaacatc cttcaggacc tccacgggcc 61 tagccttcgc gaatttgtcc aggagtgcta cgaggtatcg gccgactacg agggcaaagg 121 agacacgacg aagctgggcg agctcggcgc caagctcacg gggctggccc ctgccgacgc 181 catcctcgtg gcgagctcca tcctgcacat gctcaacctc gccaacctgg ccgaggaggt 241 gcagatcgcg caccgccgcc gcaacagcaa actcaagaaa ggtggcttcg ccgacgaagg 301 ctccgccacc accgagtccg acatcgagga gacgctcaag cgcctcgtgt ccgaggtcgg 361 caagtccccc gaggaggtgt tcgaggcgct caagaaccag accgtcgacc tcgtcttcac 421 cgcgcatccc acgcagtccg cccgccgctc gctcctgcag aaaaacgcga ggatccggaa 481 ttgtctgacc cagctgaatg ccaaggacat cactgacgac gacaagcagg agctcgatga 541 ggctctgcag agagagatcc aagcagcctt cagaactgat gaaatcagga gggcacaacc 601 caccccacag gacgaaatgc gctatgggat gagctacatc catgagactg tatggaaggg 661 cgtgcctaag ttcttgcgcc gtgtggatac agccctgaag aatatcggca tcaatgagcg 721 ccttccctac aatgtttctc tcattcggtt ctcttcttgg atgggtggtg accgcgatgg 781 aaatccaaga gttaccccgg aggtgacaag agatgtatgc ttgctggcca gaatgatggc 841 tgcaaacttg tacatcgatc agattgaaga gctgatgttt gagctctcta tgtggcgctg 901 caacgatgac gttcgcgttc gtgccgaaga gctccacagt tcgtctggtt ccaaagttac 961 caagtattac atagaattct ggaagcaaat tcctccaaac gagccctacc gggtgatact 1021 aggccatgta agggacaagc tgtacaacac acgcgagcgt gctcgccatc tgctggcatc 1081 tggagtttct gaaatttcag cggaatcgtc atttaccagt atcgaagagt tccttgagcc 1141 acttgagctg tgctacaaat cactgtgtga ctgcggcgac aaggccatcg cggacgggag 1201 cctcctggac ctcctgcgcc aggtgttcac gttcgggctc tccctggtga agctggacat 1261 ccggcaggag tcggagcggc acaccgacgt gatcgacgcc atcaccacgc acctcggcat 1321 cgggtcgtac cgcgagtggt ccgaggacaa gaggcaggag tggctgctgt cggagctgcg 1381 aggcaagcgc ccgctgctgc ccccggacct tccccagacc gacgagatcg ccgacgtcat 1441 cggcgcgttc cacgtcctcg cggagctccc gcccgacagc ttcggcccct acatcatctc 1501 catggcgacg gccccctcgg acgtgctcgc cgtagagctc ctgcagcgcg agtgcggcgt 1561 gcggccagcc gtgcccgtgg tgccgctgtt cgagaggctg gccagcctgc agctgcgccc 1621 ggcgtccgtg gagcgcctct tctcggtgga ctggtacatg gaccggatca agggcaagca 1681 gcaggtcatg gtcggctact ccgactccgg caaggacgcc ggccgcctgt ccgcggcgtg 1741 gcagctgtac agggcgcagg aggagatggc gcaggtggcc aagcgctacg gcgtcaagct 1801 caccttgttc cacggccgcg gaggcaccgt gggcaggggt ggcgggccca cgcaccttgc 1861 catcctgtcc cagccgccgg acaccatcaa cgggtccatc cgtgtgacgg tgcagggcga 1921 ggtcatcgag ttctgcttcg gggaggagca cctgtcgttc cagactctgc agcgcttcac 1981 ggccgccacg ctggagcacg gcatgcaccc gccggtctct cccaagcccg agtggcgcaa 2041 gctcatggac gagatggcgg tcgtggccac ggaggagtac cgctcggtcg tcgtcaagga 2101 gccgcgcttc gtcgagtact tcagatcggc tacaccggag accgagtacg ggaggatgaa 2161 catcggcagc cggccagcca agaggaggcc cggcggcggc atcacgaccc tgcgcgccat 2221 cccctggatc ttctcgtgga ctcagaccag gttccacctt cccgtgtggc tgggagtcgg 2281 cgccgccttc aagttcgcca tcgacaagga cgtcaggaac ttccaggtcc tcaaagagat 2341 gtacaacgag tggccattct tcagggtcac cctggacctg ctggagatgg ttttcgccaa 2401 gggagacccc ggcattgccg gcttgtatga cgagctgctt gtggcggaag aactcaagcc 2461 ctttgggaag cagctcaggg acaaatacgt ggagacacag cagcttctcc tccagatcgc 2521 tgggcacaag gatattcttg aaggcgatcc attcctgaag caggggctgg tgctgcgcaa 2581 cccctacatc accaccctga acgtgttcca ggcctacacg ctgaagcgga taagggaccc 2641 caacttcaag gtgacgcccc agccgccgct gtccaaggag ttcgccgacg agaacaagcc 2701 cgccggactg gtcaagctga acccggcgag cgagtacccg cccggcctgg aagacacgct 2761 catcctcacc atgaagggca tccgcgccgg catgcagaac actggctagg cggcttctct 2821 tcactcacct gcagagtgca ccgcaataat cagcttccgg atggtggccg ttttgtcagt 2881 tttggatgga aatgccgaac tggccagcgt ctgttttccc tatgcatatg taatttcctg 2941 cctctttata ttcactcttg ttgtcaagtc caagtggaaa atcttggcat attatacata 3001 ttgtaataat aagcatcgta caatctgc //