LOCUS HPU89349 5210 bp DNA linear VRL 02-DEC-1999 DEFINITION Human papillomavirus type 18 variant, partial sequence. ACCESSION U89349 VERSION U89349.1 KEYWORDS . SOURCE human papillomavirus 18 ORGANISM human papillomavirus 18 Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 7. REFERENCE 1 (bases 2216 to 2355; 2538 to 3127) AUTHORS Schneider-Gadicke,A. and Schwarz,E. TITLE Different human cervical carcinoma cell lines show similar transcription patterns of human papillomavirus type 18 early genes JOURNAL EMBO J. 5 (9), 2285-2292 (1986) PUBMED 3023067 REFERENCE 2 (bases 1 to 5210) AUTHORS Cole,S.T. and Danos,O. TITLE Nucleotide sequence and comparative analysis of the human papillomavirus type 18 genome. Phylogeny of papillomaviruses and repeated structure of the E6 and E7 gene products JOURNAL J. Mol. Biol. 193 (4), 599-608 (1987) PUBMED 3039146 REFERENCE 3 (bases 2146 to 4619) AUTHORS Inagaki,Y., Tsunokawa,Y., Takebe,N., Nawa,H., Nakanishi,S., Terada,M. and Sugimura,T. TITLE Nucleotide sequences of cDNAs for human papillomavirus type 18 transcripts in HeLa cells JOURNAL J. Virol. 62 (5), 1640-1646 (1988) PUBMED 2833614 REFERENCE 4 (bases 1750 to 2070) AUTHORS Ong,C.K., Chan,S.Y., Campo,M.S., Fujinaga,K., Mavromara-Nazos,P., Labropoulou,V., Pfister,H., Tay,S.K., ter Meulen,J., Villa,L.L. and Bernard,H.-U. TITLE Evolution of human papillomavirus type 18: an ancient phylogenetic root in Africa and intratype diversity reflect coevolution with human ethnic groups JOURNAL J. Virol. 67 (11), 6424-6431 (1993) PUBMED 8411344 REFERENCE 5 (bases 1 to 5210) AUTHORS Meissner,J.D. TITLE Nucleotide sequences and further characterization of human papillomavirus DNA present in the CaSki, SiHa and HeLa cervical carcinoma cell lines JOURNAL J. Gen. Virol. 80 (Pt 7), 1725-1733 (1999) PUBMED 10423141 REFERENCE 6 (bases 1 to 5210) AUTHORS Meissner,J.D. TITLE Direct Submission JOURNAL Submitted (10-FEB-1997) VEHB, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..5210 /organism="human papillomavirus 18" /mol_type="genomic DNA" /strain="type 18 variant" /db_xref="taxon:333761" /lab_host="HeLa cervical carcinoma cell line (ATCC CCL2)" variation 140 /replace="c" variation 666 /replace="a" misc_difference 725 /note="conflict; see reference HPV-18 sequence in GenBank Accession Number X05015" /citation=[2] /replace="c" misc_difference 890 /note="conflict; see reference HPV-18 sequence in GenBank Accession Number X05015" /citation=[2] /replace="c" misc_difference 1107 /note="conflict; see reference HPV-18 sequence in GenBank Accession Number X05015" /citation=[2] /replace="c" variation 1523 /replace="t" variation 1751 /replace="c" variation 1794 /replace="c" variation 1832 /replace="a" variation 1857 /replace="t" variation 1935 /replace="a" variation 2226 /replace="t" misc_difference 2291 /note="conflict; see HPV-18 sequence in GenBank Accession Number M26798" /citation=[1] /replace="g" misc_difference 2409 /note="conflict; see reference HPV-18 sequence in GenBank Accession Number X05015" /citation=[2] /replace="c" variation 2607 /replace="t" variation 2671 /replace="c" variation 2873 /replace="c" variation 2928 /replace="g" variation 3134 /replace="a" variation 3316 /replace="c" variation 3475 /replace="t" variation 3929 /replace="t" variation 3965 /replace="t" variation 4391 /replace="c" BASE COUNT 1655 a 921 c 1125 g 1509 t ORIGIN 1 ttattaactg ttggtaatcc atattttagg gttcctgcag gtggtggcaa taagcaggat 61 attcctaagg tttctgcata ccaatataga gtatttaggg tgcagttacc tgacccaaat 121 aaatttggtt tacctgataa tagtatttat aatcctgaaa cacaacgttt agtgtgggcc 181 tgtgctggag tggaaattgg ccgtggtcag cctttaggtg ttggccttag tgggcatcca 241 ttttataata aattagatga cactgaaagt tcccatgccg ccacgtctaa tgtttctgag 301 gacgttaggg acaatgtgtc tgtagattat aagcagacac agttatgtat tttgggctgt 361 gcccctgcta ttggggaaca ctgggctaaa ggcactgctt gtaaatcgcg tcctttatca 421 cagggcgatt gccccccttt agaacttaaa aacacagttt tggaagatgg tgatatggta 481 gatactggat atggtgccat ggactttagt acattgcaag atactaaatg tgaggtacca 541 ttggatattt gtcagtctat ttgtaaatat cctgattatt tacaaatgtc tgcagatcct 601 tatggggatt ccatgttttt ttgcttacgg cgtgagcagc tttttgctag gcatttttgg 661 aatagggcag gtactatggg tgacactgtg cctcaatcct tatatattaa aggcacaggt 721 atgcgtgctt cacctggcag ctgtgtgtat tctccctctc caagtggctc tattgttacc 781 tctgactccc agttgtttaa taaaccatat tggttacata aggcacaggg tcataacaat 841 ggtgtttgct ggcataatca attatttgtt actgtggtag ataccactcg cagtaccaat 901 ttaacaatat gtgcttctac acagtctcct gtacctgggc aatatgatgc taccaaattt 961 aagcagtata gcagacatgt tgaggaatat gatttgcagt ttatttttca gttgtgtact 1021 attactttaa ctgcagatgt tatgtcctat attcatagta tgaatagcag tattttagag 1081 gattggaact ttggtgttcc ccccccgcca actactagtt tggtggatac atatcgtttt 1141 gtacaatctg ttgctattac ctgtcaaaag gatgctgcac cggctgaaaa taaggatccc 1201 tatgataagt taaagttttg gaatgtggat ttaaaggaaa agttttcttt agacttagat 1261 caatatcccc ttggacgtaa atttttggtt caggctggat tgcgtcgcaa gcccaccata 1321 ggccctcgca aacgttctgc tccatctgcc actacgtctt ctaaacctgc caagcgtgtg 1381 cgtgtacgtg ccaggaagta atatgtgtgt gtgtatatat atatacatct attgttgtgt 1441 ttgtatgtcc tgtgtttgtg tttgttgtat gattgcattg tatggtatgt atggttgttg 1501 ttgtatgttg tatgttacta taattgttgg tatgtggcat taaataaaat atgttttgtg 1561 gttctgtgtg ttatgtggtt gcgccctagt gagtaacaac tgtatttgtg tttgtggtat 1621 gggtgttgct tgttgggcta tatattgtcc tgtatttcaa gttataaaac tgcacacctt 1681 acagcatcca ttttatccta caatcctcca ttttgctgtg caaccgattt cggttgcctt 1741 tggcttatgt ttgtggtttt ctgcacaata cagtacgctg gcactattgc aaaatttaat 1801 cttttgggca ctgctcctac atattttgaa ccattggcgc gcctctttgg cgcatacaag 1861 gcgcacctgg tattagtcat tttcctgtcc aggtgcgcta caacaattgc ttgcataact 1921 atatccactc cctatgtaat aaaactgctt ttaggcacat attttagttt gtttttactt 1981 aagctaattg catacttggc ttgtacaact actttcatgt ccaacattct gtctaccctt 2041 aacatgaact ataatatgac taagctgtgc atacatagtt tatgcaaccg aaataggttg 2101 ggcagcacat actatacttt tcattaatac ttttaacaat tgtagtatat aaaaaaggga 2161 gtaaccgaaa acggtcggga ccgaaaacgg tgtatataaa agatgtgaga aacacaccac 2221 aataccatgg cgcgctttga ggatccaaca cggcgaccct acaagctacc tgatctgtgc 2281 acggaactga acacttcact gcaagacata gaaataacct gtgtatattg caagacagta 2341 ttggaactta cagaggtatt tgaatttgca tttaaagatt tatttgtggt gtatagagac 2401 agtataccgc atgctgcatg ccataaatgt atagattttt attctagaat tagagaatta 2461 agacattatt cagactctgt gtatggagac acattggaaa aactaactaa cactgggtta 2521 tacaatttat taataaggtg cctgcggtgc cagaaaccgt tgaatccagc agaaaaactt 2581 agacacctta atgaaaaacg acgattccac aacatagctg ggcactatag aggccagtgc 2641 cattcgtgct gcaaccgagc acgacaggaa agactccaac gacgcagaga aacacaagta 2701 taatattaag tatgcatgga cctaaggcaa cattgcaaga cattgtattg catttagagc 2761 cccaaaatga aattccggtt gaccttctat gtcacgagca attaagcgac tcagaggaag 2821 aaaacgatga aatagatgga gttaatcatc aacatttacc agcccgacga gctgaaccac 2881 aacgtcacac aatgttgtgt atgtgttgta agtgtgaagc cagaattaag ctagtagtag 2941 aaagctcagc agacgacctt cgagcattcc agcagctgtt tctgaacacc ctgtcctttg 3001 tgtgtccgtg gtgtgcatcc cagcagtaag caacaatggc tgatccagaa ggtacagacg 3061 gggagggcac gggttgtaac ggctggtttt atgtacaagc tattgtagac aaaaaaacag 3121 gagatgtaat atctgatgac gaggacgaaa atgcaacaga cacagggtcg gatatggtag 3181 attttattga tacacaagga acattttgtg aacaggcaga gctagagaca gcacaggcat 3241 tgttccatgc gcaggaggtc cacaatgatg cacaagtgtt gcatgtttta aaacgaaagt 3301 ttgcaggagg cagcaaagaa aacagtccat taggggagcg gctggaggtg gatacagagt 3361 taagtccacg gttacaagaa atatctttaa atagtgggca gaaaaaggca aaaaggcggc 3421 tgtttacaat atcagatagt ggctatggct gttctgaagt ggaagcaaca cagaatcagg 3481 taactacaaa tggcgaacat ggcggcaatg tatgtagtgg cggcagtacg gaggctatag 3541 acaacggggg cacagagggc aacaacagca gtgtagacgg tacaagtgac aatagcaata 3601 tagaaaatgt aaatccacaa tgtaccatag cacaattaaa agacttgtta aaagtaaaca 3661 ataaacaagg agctatgtta gcagtattta aagacacata tgggctatca tttacagatt 3721 tagttagaaa ttttaaaagt gataaaacca cgtgtacaga ttgggttaca gctatatttg 3781 gagtaaaccc aacaatagca gaaggattta aaacactaat acagccattt atattatatg 3841 cccatattca atgtctagac tgtaaatggg gagtattaat attagccctg ttgcgttaca 3901 aatgtggtaa gagtagacta acagttgcca aaggtttaag tacgttgtta cacgtacctg 3961 aaacgtgtat gttaattcaa ccaccaaaat tgcgaagtag tgttgcagca ctatattggt 4021 atagaacagg aatatcaaat attagtgaag taatgggaga cacacctgag tggatacaaa 4081 gacttactat tatacaacat ggaatagatg atagcaattt tgatttgtca gaaatggtac 4141 aatgggcatt tgataatgag ctgacagatg aaagcgatat ggcatttgaa tatgccttat 4201 tagcagacag caacagcaat gcagctgcct ttttaaaaag caattgccaa gctaaatatt 4261 taaaagattg tgccacaatg tgcaaacatt ataggcgagc ccaaaaacga caaatgaata 4321 tgtcacagtg gatacgattt agatgttcaa aaatagatga agggggagat tggagaccaa 4381 tagtgcaatt tctgcgatac caacaaatag agtttataac atttttagga gccttaaaat 4441 catttttaaa aggaaccccc aaaaaaaatt gtttagtatt ttgtggacca gcaaatacag 4501 gaaaatcata ttttggaatg agttttatac actttataca aggagcagta atatcatttg 4561 tgaattccac tagtcatttt tggttggaac cgttaacaga tactaaggtg gccatgttag 4621 atgatgcaac gaccacgtgt tggacatact ttgataccta tatgagaaat gcgttagatg 4681 gcaatccaat aagtattgat agaaagcaca aaccattaat acaactaaaa tgtcctccaa 4741 tactactaac cacaaatata catccagcaa aggataatag atggccatat ttagaaagta 4801 gaataacagt atttgaattt ccaaatgcat ttccatttga taaaaatggc aatccagtat 4861 atgaaataaa tgacaaaaat tggaaatgtt tttttgaaag gacatggtcc agattagatt 4921 tgcacgagga agaggaagat gcagacaccg aaggaaaccc tttcggaacg tttaagtgcg 4981 ttgcaggaca aaatcataga ccactatgaa aatgacagta aagacataga cagccaaata 5041 cagtattggc aactaatacg ttgggaaaat gcaatattct ttgcagcaag ggaacatggc 5101 atacagacat taaaccacca ggtggtgcca gcctataaca tttcaaaaag taaagcacat 5161 aaagctattg aactgcaaat ggccctacaa ggccttgcac aaagtgcata //