LOCUS ZMU42754 7551 bp DNA linear PLN 14-JUL-2016
DEFINITION Zea mays trnI pseudogene, complete sequence; chloroplast-derived
orf31 gene, complete cds; and chloroplast-derived orf48 gene,
partial cds; mitochondrial.
ACCESSION U42754
VERSION U42754.1
KEYWORDS .
SOURCE mitochondrion Zea mays
ORGANISM Zea mays
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
Zea.
REFERENCE 1 (bases 1 to 7551)
AUTHORS Zheng,D., Nielsen,B.L. and Daniell,H.
TITLE A 7.5-kbp region of the maize (T cytoplasm) mitochondrial genome
contains a chloroplast-like trnI (CAT) pseudo gene and many short
segments homologous to chloroplast and other known genes
JOURNAL Curr. Genet. 32 (2), 125-131 (1997)
PUBMED 9294260
REFERENCE 2 (bases 1 to 7551)
AUTHORS Zheng,D. and Daniell,H.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-1995) Department of Botany & Microbiology, Auburn
University, Auburn, AL 36849, USA
FEATURES Location/Qualifiers
source 1..7551
/organism="Zea mays"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/strain="cmsT"
/db_xref="taxon:4577"
/map="between 11 and 6kb repeats"
/note="fragment from 6209-6963 is chloroplast-derived
sequence; In this 7.5 kbp region, there are many short
segments homologous to portions of chloroplast genes and
other known genes"
misc_feature 5812..7551
/note="overlaps with GenBank Accession Number U18301"
gene complement(6221..6294)
/gene="trnI"
/pseudo
tRNA complement(6221..6294)
/gene="trnI"
/product="tRNA-OTHER"
/note="similarity to ct-trnI(CAT) gene of maize and rice,
GenBank Accession number X86563 and X15901"
/pseudo
CDS 6536..6631
/note="similar to rice chloroplast orf28, GenBank
Accession Number X15901"
/codon_start=1
/product="chloroplast-derived orf31"
/protein_id="AAB91423.1"
/translation="MNYEFNRFSLQKDVYPCSLSDNHLFPNLVWG"
CDS <6692..6838
/note="similar to rice chloroplast orf64, GenBank
Accession Number X15901"
/codon_start=1
/product="chloroplast-derived orf48"
/protein_id="AAB91424.1"
/translation="VIGSIGLDMLFGQVPNEIFFIKDEVTDEDLSSSYTRLLERHVIL
RSGP"
BASE COUNT 2206 a 1799 c 1596 g 1950 t
ORIGIN
1 ggatccttga ccgagaggag gccatcccga gttggtaaga ggttggaaaa gaggaaagca
61 gctacccgac cgcgctagtt gctcaatccg tggcttgtga tactaaagaa accaagcaag
121 aaaacggatg ctatgctagt tagcgctacg agcaatcaaa cggatatgct caaaggaaag
181 aacggacatt tctacgagtg aactcttcat tcaataaaca aagcatgatt ggagcaagct
241 gccttgacca atatactgga ccatctgaga agaaaggggt gatcctacta tgacaccaga
301 taataccaga gaatagtcaa tctaaactag ataaagccga tatgcgagga gcctaggtag
361 ctgtttgatc gaggaagcac ggcgaaggaa ggcggctaga acatcctcaa ggaagaagcc
421 atatgttgtc ttaccatgag ctgtatccat tggtcaaaat ggaatcattg gttattagtt
481 cggaaaagag tatcagtccc ggataaatcc acttaagaag ctgcttcttt tgctgggagc
541 aaggacaaca agaaaaggtc ttgagctgcc aagaagaatt ctaattaata ggaaggttgg
601 actacctcga atggcaacat gctcgctgat tcctaccact cctatctaca taactgctcc
661 agagaaggga aggcagatgt cgaaccagcg attgagtgta ctagttcatt taatgattgc
721 aaagcggagg ctaaggacat aacgaacagt gggcaaagaa gaagcatggg catggatacg
781 agaccagaag gaaagaacga atcaccgtaa tgcattaacc agagtagccg ccaggtgcag
841 tgcatacgcg aattctgggt aacctatcgt tgattgagga tcgagggact aactgtcctt
901 ccttgcggtt actctatttc ctgttcgtcg gcgccatcag attaatcgta tgtgatcctg
961 gtatcgctcg agcatctctt tctgatgaaa cctttgccct tgctttctcc actacacctg
1021 gtaacgcaca gtgcttcttt cttcgatcta tccaagggag gcttattcct ttaagcagag
1081 tatccagttc ggcattccct tttctttctg atcgtggtcc ttctccttta tccgaatccg
1141 tgtgacttcc tattcgaaaa gaaacaacta ctgtcactca agaaagcaga tcaagaaagc
1201 tgagccataa cttcacctcc aacccaaccc taatgctaag aaggtgctaa agaaggtgca
1261 agaagaaaag cttatgctgg tgcaagaact taccctctct acgaaagaga ccttgccaca
1321 gcccacttcc tcggacgagt tatattcctt ttttgctatt accccactct ctgcttcttc
1381 tatatctgat gataccttag ccgaggacga aaacgactac gacgaagaaa aacgaatgaa
1441 ggccgatttc cttttccggt acctcgactc caataacaaa agaagaacag tctcccgtac
1501 tgccaatcta cactacacga agagggagga aagcgttgat tgattgcagc ctcggtcaat
1561 ctcttgctgt ctctagtctc tagcgcaagg aatgatgccg accagttgga atataggtgt
1621 cacttgatct gacacacttt ctgatctgct gcagcgatga acagtcagat atcaagagat
1681 ccaatcttag gctgtatcaa acttccgact tcatgaactc cttccaccta tcaagtccaa
1741 aggaccgata tcagctccca tcccatcccg acaacagaaa tgatctcatt cattcaacat
1801 ctggtaccaa taccaatcaa tgtgtcagtt cactcaatgc gagtagaata cgaaagacag
1861 aacaggaacc tggccaatgg ataagaaatg ggtagattca caccggcctc aaagagttgt
1921 cagtcccttt cgagtaagca cctagccggc gattgtgaca gaactcggct aagaggtcaa
1981 tgctaagaag cagtcaactc aattcaagtc aaggtgccgg gatagccact atttatccgg
2041 ccagtggaat agctttccac cgagccccaa gcaagtaagt aattcgcttt cctccgttcg
2101 tgtaagcact catgcttcca cttcactcca gaaaggaagc taagtcattt ctgccataga
2161 aacaaacgaa tttcggggcc ggggttcttc ctaattggat gctgaaccaa gcaagaaaac
2221 ttaggatgtg ctagactcgc gatagtgagt aagaggaaac gttagcgcaa ctgctttcca
2281 gctagaaaac atcatttcaa gcactggcct tcctaaaata cggactagaa ctcatctcat
2341 ccttcccaag gctagctctg ttttggtgcg ggtctagtag acagttccct ctcgtggttt
2401 catacatcca tagatttgca ttcaggatat catccgtggg tacaggaaag gttgacttct
2461 ctccttccat caagtccatc aagtccagaa gcaaggtcaa tcaagtgcag gatcagcagg
2521 agcgcgccca ttcactaatc gaaatcgtct tttctaacga tttatggtat ggcccgagac
2581 ctgaaaaaga gtaggaatga tagattccgc ttccaaaaca agggtcatga gcctgtttca
2641 gatgattcct gtgttcgatt cgaaaggtga cgggcctatt ccgtccaatg accacaaata
2701 caatcgtact tttgattctc ttaaagcact gaagaagcac tgaagtctat ggcacgcttg
2761 gttgaagctg gcttggtctc acatgaatca cgtaagcaga tttgacctct ggaaaccaca
2821 tatggattcg aaagctgctt tcccgtgatt aggctcactc tgaccctcta tggaaccgga
2881 ccgaggaaag agaagtgtgt cgtttgcaca atcaatgact cacgatcttc agttggctaa
2941 gaagaaggca gccaacagat ggaactaaat gataatgccc cggcaggctg gcactcatgc
3001 tttcaggcag gcaggcgcgg agttcatccc actatactag actaggttcg cgagccctgt
3061 ccgattgacg ataaatctta ttttttcata gtttctttcg aaacagcccg cattcccact
3121 cttcctttta ggaaaaaaaa taaacatgtg aagaaagccc gctaacccac tcttccttcc
3181 cttgcctagg tagggatatg caagaataag caggacaacc taccacttat gaattcagta
3241 atatgacgct agcttagcta aaatagcaaa aaataaactc atcttagttg gcaatatgtc
3301 ttctttcttt gttcgtaact ttaaactcat tgaactagcg ctaaagcact cgcatctctg
3361 aaattctagg ccaaaagcta tgctgaccga tccataaatc tataaacaga gtttagagag
3421 ccattacttc tttcttcctt ggatctggag gcagacttga gtattaaata atagaacgca
3481 gcatggacaa cgaataaaga gaatgtacgg aacaacgcct tcttcttttc ggcctggcaa
3541 atcctgacca aagacagtgc cagaagatag ccaacacagg acagaatact ctctagaaac
3601 gtcgccaatt gcacttggtt catcgtccac gagtcggagc tcatctctac ttttagttcg
3661 acgtcatatg gccagacgct ttctacttcc tctagagagc ccgagcttgt tcatgacact
3721 ctttggagat attattgata tgaaatccaa tactttccac tgttcgacct gacctctgcg
3781 cactaaagac ccgcctgttc taagaggata ctgcttactt aagaataagc ctcaactctc
3841 agatagaata gatctctttt caagccctat ttaagtgtaa gtgccaggac tggacttccc
3901 acacgtatta tacctgccga tgtcccaatt cataaaagag cttcctctta gccacttgaa
3961 ctgatttaag aatctatctc tggcaacttg aaaacaaccc aacctaggcc ttgggcgctt
4021 atgctttcaa cagagcttac ttctttgtga ccagcactga tgcttcgtct gctgcgatcg
4081 gacgatcaat acagatatag aatgtgacac cgtcaactct gctgccttac attctattaa
4141 agaaaacctc acatatatat cattgagtca tacttttcgt tttcatgctc gtataactgt
4201 caaatcacta ctaatccttt ctagacaatc ccggcacgca ggctctggat agagatctga
4261 ccttatggaa agggaatgcc tatgcttttg actctgactc cccataacct ggtgtcgccc
4321 gtggtcaact ggtacacatg gccaacggca ctacggaaaa aggtctagtt gatactagag
4381 aatcccggct ccaatttcct acggcactct ttcttttctg tgtgagtgca taacctagct
4441 ttccggatag atttcccact tcttaaccag cggcaggctt gcccgtcacc ccgtcaccat
4501 tcacattcac cttggggccc catgctcttc aagacttcta tgtatgatac ctctccctct
4561 gctaagcttc ccaacccaaa cctttcccgg caagcaaata gaatagaatc ctatcctatg
4621 aaacaagctt gtactattca aatcaaacct ccgagatctt cggatgcacg tgctttgtga
4681 acattccatc tcctgcacaa gacaaactca gctgtgaagg aatgaatggg aatgggcttg
4741 tcggctgtga agactatcat ctgtaggcga gcgaagcaaa gccctagttc aatatagagg
4801 ccgtcacgaa gggatccctc gggtcaacaa gcaagggatg agcgctttgt tgctttatta
4861 tcacattaga gaagcggaac ctccaagctc agacatctcg aactcagaaa ctacccttct
4921 atcccaccct gctcctccgg catcggaagc agaactacct gaccgaaggg atagacagga
4981 agggaagacg gtcatacaaa ggccgaataa agctctcttg aagctgcatc tgaatagacc
5041 tagagtcact cagtacatac gaacccttga ataaatatgt taagaattga gaagtatgaa
5101 atgtgggcat cataacaaaa aaagaaaaag accgacctgt aagactaatg tctacttatt
5161 tatacctttg agaggtcact tagactatta ttattttctc tttagctacg taggttatat
5221 aagattcaat tcaatctaac acggaccctt cggctaccac aagatattta gaaaccaaag
5281 aagctgagcc tactttacgc acttaaggca gcagcagatg atgaagaaat gggcggtaga
5341 tgataatgag aaagggcgcc ccttggcatt tcctgcgggg gagtctgatt gatccaatca
5401 cgacgaatga tgtcaacccc ctcttttgcg cctaacttga ctctgattcc ccactatgag
5461 ctgatcaggg ctagttcgct acagaatgaa ttacgaagcc gtctttccga ctcaatgtat
5521 tgcctttgga caggatctga cgaggaagtg agagagggac accaaacata ggtgcgtacc
5581 taagccccaa tccaatggac tatgtcatac aggaggaacc catggaggtt ggaaagaaag
5641 caggttttgc ttctgcttcc ttcgagctcc cacagcagtc tagaagtctt ccccagggcg
5701 ctaagcgata atttctgtcc tcaggacgtg ggggagcaag tttcgaaccc gacacatcca
5761 ctgcacgatc cttttcagca gtagttccgg gattggattt acaagggggc gggaattctt
5821 tgttagcttt aggctagcaa tccggttcaa agccagattg gcccacttat tcgaatataa
5881 agaagaggaa gacaaactag ccaagagaca gaaaaggtag agaccaacca ccgaaacaag
5941 ggagtaatag gggtatatgg gccaagaaag gtcgatgtat cggtcagcta tacctaatct
6001 tcacttaaaa acgcatcaca ccctttgtag gttcaagccg aagtcaagca tgatcaccta
6061 ctgcaaactc caaatatcgt ggtcggcgta cctggtctga gcagctttta atctagaata
6121 agttgaatct tctcggcact ctccttcatc ttctgtggcc ccgtcggtcg gtacgtgcca
6181 acccaaacaa atcggggtac gacaaaggtt cccgttcgcg tgcatccagc aggaattgaa
6241 cccgcaaatt taccaattat gagttgggcg ctttcaccat tcagccatgg atgcttaaca
6301 gggatcatcg tacatcgtaa ataaccaatt ttcatataga aacacatatc atagaaaaat
6361 gaaatcgaaa atattcggag atgactatga aaacacctcc tcggatccaa ttctattgag
6421 tctgacccat agtgatcatt tctctttagc aaagaatgac cttggttatc aaaggattga
6481 acaaccgaga tccatttact tatgatacct agttgacatt gctaacaagg atctaatgaa
6541 ttatgagttt aatagattct ctttacagaa agacgtatat ccttgctcat tatcagacaa
6601 tcacttattc ccaaacctcg tgtggggcta atcgttttca tttaccatct catggaaaac
6661 ccttttcgtt ccgcttagcc tacggtattt agtgataggt tctataggac tggacatgct
6721 atttggtcaa gtacctaacg aaatcttctt cattaaggac gaggtcacag acgaagacct
6781 ttcatcttca tatactaggt tactggaaag acatgtcata ctaagatcgg gtccataacc
6841 acgtagttcc agtgcaacta gatcttgtag cacttagcaa cgaggcccta tccattagta
6901 ttccacataa gaaatccatt atagaaacta atacaattag attagctctt catagtcaaa
6961 cttattactg caatgcaatc tcgacatgtg gagtggaaga gtagaggatt tgagcttcca
7021 ataccggatt gatagctgtg agtggaagga tggatgtcct aacacgaacg gagtcaggtt
7081 tactcacaag tgccgatacc tctgccctcg aatgcggaag tgatgtgttt gtatcatatc
7141 aagctgctct gttctatatc gataagtgcc agctctgcac cagttgagca gcgcacttag
7201 cgctgtgtac agactagtct cagagatgat ctgatctcta agcttttcgc agcgcagcct
7261 agagtaaggt aaagacctag gtgttagttg ttcattcact ctagaagttt ttgctccagc
7321 aatctacttc ccatcccaaa gtaaaatccg attcatttga tttcgattca agaatctctt
7381 atttctccgg tagaaggtgc cagaaacatg gatttcttga ctgtctgcag aatgcgaacc
7441 tgaccgatct cgttcctcgg ggcacttact ctattggagc aatccatccg gtggggccac
7501 gacgcatcgt cggcagacta gagcgagcct tagtgaatcc tgagtggatc c
//