LOCUS HIV1U16064 1051 bp RNA linear VRL 30-JAN-1996 DEFINITION Human immunodeficiency virus type 1 clone XSH144C12R envelope glycoprotein (env) gene, V1-V5 region, partial cds. ACCESSION U16064 VERSION U16064.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1051) AUTHORS Shapshak,P., Nagano,I., Xin,K., Bradley,W., McCoy,C.B., Sun,N.C.J., Stewart,R.V., Yoshioka,M., Petito,C., Goodkin,K., Douyon,R., Srivastava,A.K. and Crandall,K.A. TITLE HIV-1 heterogeneity and cytokines. Neuropathogenesis JOURNAL Adv. Exp. Med. Biol. 373, 225-238 (1995) PUBMED 7668155 REFERENCE 2 (bases 1 to 1051) AUTHORS Xin,K., Shapshak,P., Nagano,I., Srivastava,A.K., Wood,C., Stewart,R.V., Morikawa,S., Ushijima,H. and Okuda,K. TITLE Heterogeneity of V1-V5 regions of the HIV envelope gene from brain, cerebrospinal fluid, and blood from patients with AIDS JOURNAL Unpublished REFERENCE 3 (bases 1 to 1051) AUTHORS Shapshak,P. TITLE Direct Submission JOURNAL Submitted (18-OCT-1994) Paul Shapshak, Department of Psychiatry, University of Miami School of Medicine, 1800 NW 10th Avenue, Elliott Building 2007, Miami, FL 33136, USA FEATURES Location/Qualifiers source 1..1051 /organism="Human immunodeficiency virus 1" /mol_type="genomic RNA" /db_xref="taxon:11676" /clone="XSH144C12R" /tissue_type="cerebrospinal fluid (CSF)" gene 1..1051 /gene="env" CDS <1..>1051 /gene="env" /note="Caveat: please note that this sequence has been determined to be similar to HIV-1/IIIB, GenBank Accession Number K03455. Additional studies are being done to investigate this." /codon_start=1 /product="envelope glycoprotein, V1-V5 region" /protein_id="AAA86070.1" /translation="TPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIR GKVQKEYAFFYKLDIIPIDNDTTSYKLTSCDTSVITQGCPKVSFGPIPIPYCAPAGFA ILKCNNKTSNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAK TIIVQLNTSVEINCTRPSNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNIGRPKWNN TLKQIATKLREQFVNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTHLFNSTLVNS TWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYPPPISGQIRCSSNITGLLLTR DGGNANNESEIFRPGG" BASE COUNT 395 a 183 c 211 g 262 t ORIGIN 1 accccactct gtgttagttt aaagtgcact gatttgaaga atgatactaa taccaatagt 61 agtagcggga gaatgataat ggagaaagga gagataaaaa actgctcttt caatatcagc 121 acaagcataa gaggtaaggt gcagaaagaa tatgcatttt tttataaact tgatataata 181 ccaatagata atgatactac cagctataag ttgacaagtt gtgacacctc agtcattaca 241 cagggctgtc caaaggtatc ctttgggcca attcccatac cttattgtgc cccggctggt 301 tttgcgattc taaaatgtaa taataagacg tccaatggaa caggaccatg tacaaatgtc 361 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaat 421 ggcagtctag cagaagaaga ggtagtaatt agatctgtca atttcacgga caatgctaaa 481 accataatag tacagctgaa cacatctgta gaaattaatt gtacaagacc cagcaacaat 541 acaagaaaaa gaatccgtat ccagagagga ccagggagag catttgttac aatagggaaa 601 ataggaaata tgagacaagc acattgtaac attggtagac caaaatggaa taacacttta 661 aaacagatag ctaccaaatt aagagaacaa tttgtaaata ataaaacaat aatctttaag 721 caatcctcag gaggggaccc agaaattgta acgcacagtt ttaattgtgg tggggaattt 781 ttctactgta attcaacaca tctgtttaat agtactttgg ttaatagtac ttggagtact 841 gaagggtcaa ataacactga aggaagtgac acaatcaccc tcccatgcag aataaaacaa 901 attataaaca tgtggcagaa agtaggaaaa gcaatgtatc cccctcccat cagtggacaa 961 attagatgtt catcaaatat tacagggctg ctattaacaa gagatggtgg taatgccaac 1021 aatgagtccg agatcttcag acctggagga g //