LOCUS HIV1U16059 1051 bp mRNA linear VRL 30-JAN-1996 DEFINITION Human immunodeficiency virus type 1 clone XSH141R7D envelope glycoprotein (env) mRNA, V1-V5 regions, partial cds. ACCESSION U16059 VERSION U16059.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1051) AUTHORS Shapshak,P., Nagano,I., Xin,K., Bradley,W., McCoy,C.B., Sun,N.C.J., Stewart,R.V., Yoshioka,M., Petito,C., Goodkin,K., Douyon,R., Srivastava,A.K. and Crandall,K.A. TITLE HIV-1 heterogeneity and cytokines. Neuropathogenesis JOURNAL Adv. Exp. Med. Biol. 373, 225-238 (1995) PUBMED 7668155 REFERENCE 2 (bases 1 to 1051) AUTHORS Xin,K.-Q., Shapshak,P., Nagano,I., Stewart,R.V., Srivastava,A.K., Wood,C., Morikawa,S., Ushijima,H. and Okuda,K. TITLE Heteogeneity of V1-V5 regions of the HIV-1 envelope gene from brain, cerebrospinal fluid, and blood from patients with AIDS JOURNAL Unpublished REFERENCE 3 (bases 1 to 1051) AUTHORS Xin,K.-Q. TITLE Direct Submission JOURNAL Submitted (18-OCT-1994) Ke-Qin Xin, Department of Psychiatry, University of Miami, School of Medicine, 1800 N.W. 10th Avenue, Elliott Building 2007, Miami, FL 33136, USA FEATURES Location/Qualifiers source 1..1051 /organism="Human immunodeficiency virus 1" /mol_type="mRNA" /host="Homo sapiens" /db_xref="taxon:11676" /clone="XSH141R7D" /tissue_type="brain" gene 1..1051 /gene="env" CDS <1..>1051 /gene="env" /note="Caveat: please note that this sequence has been determined to be similar to HIV-1/IIIB, GenBank Accession Number K03455. Additional studies are being done to investigate this." /codon_start=1 /product="envelope glycoprotein" /protein_id="AAA86065.1" /translation="TPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIR GKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFA ILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAK TIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGSMRQAHCNISRPRWNN TLRQIATRLREQFGDNKTIIFNQSSGGNPDIVTHSFNCGGEGFYCNSTHLFNSTWHTS TWRADGSNDTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTR DGGNSNNESEIFRPGG" BASE COUNT 389 a 189 c 218 g 255 t ORIGIN 1 accccactct gtgttagttt aaagtgcact gatttgaaga atgatactaa taccaatagt 61 agtagcggga gaatgataat ggagaaagga gagataaaaa actgctcttt caatatcagc 121 acaagcataa gaggtaaggt gcagaaagaa tatgcatttt tttataaact tgatataata 181 ccaatagata atgatactac cagctataag ttgacaagtt gtaacacctc agtcattaca 241 caggcctgtc caaaggtatc ctttgagcca attcccatac attattgtgc cccggctggt 301 tttgcgattc taaaatgtaa taataagacg ttcaatggaa caggaccatg tacaaatgtc 361 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaat 421 ggcagtctag cagaagaaga ggtagtaatt agatctgtca atttcacgga caatgctaaa 481 accataatag tacagctgaa cacatctgta gaaattaatt gtacaagacc caacaacaat 541 acaagaaaaa gaatccgtat ccagagagga ccagggagag catttgttac aataggaaag 601 ataggaagta tgagacaagc acattgtaac attagtagac cgagatggaa taacactttg 661 agacagatag ctaccagatt aagagagcaa tttggagata ataaaacgat aatctttaac 721 caatcctcag gagggaaccc agacattgta acccacagtt tcaattgtgg aggggaaggt 781 ttctactgta actcaacaca cctgtttaat agtacttggc atactagtac ttggagagct 841 gatggctcaa atgacactga aggtagtgac acgatcaccc tcccatgcag aataaaacaa 901 attataaaca tgtggcagaa agtaggaaaa gcaatgtatg cccctcccat cagtggacaa 961 attagatgtt catcaaatat tacagggctg ctattaacaa gagatggtgg taatagcaac 1021 aatgagtccg agatcttcag acctggagga g //