LOCUS HIV1U16057 1051 bp mRNA linear VRL 30-JAN-1996
DEFINITION Human immunodeficiency virus type 1 clone XSH141R5D envelope
glycoprotein (env) mRNA, V1-V5 regions, partial cds.
ACCESSION U16057
VERSION U16057.1
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE 1 (bases 1 to 1051)
AUTHORS Shapshak,P., Nagano,I., Xin,K., Bradley,W., McCoy,C.B., Sun,N.C.J.,
Stewart,R.V., Yoshioka,M., Petito,C., Goodkin,K., Douyon,R.,
Srivastava,A.K. and Crandall,K.A.
TITLE HIV-1 heterogeneity and cytokines. Neuropathogenesis
JOURNAL Adv. Exp. Med. Biol. 373, 225-238 (1995)
PUBMED 7668155
REFERENCE 2 (bases 1 to 1051)
AUTHORS Xin,K.-Q., Shapshak,P., Nagano,I., Stewart,R.V., Srivastava,A.K.,
Wood,C., Morikawa,S., Ushijima,H. and Okuda,K.
TITLE Heteogeneity of V1-V5 regions of the HIV-1 envelope gene from
brain, cerebrospinal fluid, and blood from patients with AIDS
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1051)
AUTHORS Xin,K.-Q.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-1994) Ke-Qin Xin, Department of Psychiatry,
University of Miami, School of Medicine, 1800 N.W. 10th Avenue,
Elliott Building 2007, Miami, FL 33136, USA
FEATURES Location/Qualifiers
source 1..1051
/organism="Human immunodeficiency virus 1"
/mol_type="mRNA"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="XSH141R5D"
/tissue_type="brain"
gene 1..1051
/gene="env"
CDS <1..>1051
/gene="env"
/note="Caveat: please note that this sequence has been
determined to be similar to HIV-1/IIIB, GenBank Accession
Number K03455. Additional studies are being done to
investigate this."
/codon_start=1
/product="envelope glycoprotein"
/protein_id="AAA86063.1"
/translation="TPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIR
GKVQKEYAFFYKLDIIPIDNDTTSYKLTSCDTSVITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAK
TIIVQLNTSVEINYSRPNNNTRKRIRIQRGPGRAFVTIGKIGSMRQAHCNISRPKWNN
TLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNS
TWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTR
DGGNTNNESEIFRPGG"
BASE COUNT 400 a 182 c 210 g 259 t
ORIGIN
1 accccactct gtgttagttt aaagtgcact gatttgaaga atgatactaa taccaatagt
61 agtagcggga gaatgataat ggagaaagga gagataaaaa actgctcttt caatatcagc
121 acaagcataa gaggtaaggt gcagaaagaa tatgcatttt tttataaact cgatataata
181 ccaatagata atgatactac cagctataag ttgacaagtt gtgacacctc agtcattaca
241 caggcctgtc caaaggtatc ctttgagcca attcccatac attattgtgc cccggctggt
301 tttgcgattc taaaatgtaa taataagacg ttcaatggaa caggaccatg tacaaatgtc
361 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaat
421 ggcagtctgg cagaagaaga ggtagtaatt agatctgtca atttcacgga caatgctaaa
481 accataatag tacagctgaa cacatctgta gaaattaatt attcaagacc caacaacaat
541 acaagaaaaa gaatccgcat ccagagagga ccagggagag catttgttac aataggaaag
601 ataggaagta tgagacaagc acattgtaac attagtagac caaaatggaa taacacttta
661 aaacagatag ctagcaaatt aagagaacaa tttggaaata ataaaacaat aatctttaag
721 caatcctcag gaggggaccc agaaattgta acgcacagtt ttaattgtgg aggggaattt
781 ttctactgta attcaacaca actgtttaat agtacttggt ttaatagtac ttggagtact
841 gaagggtcaa ataacactga aggaagtgac acaatcaccc tcccatgcag aataaaacaa
901 attataaaca tgtggcagaa agtaggaaaa gcaatgtatg cccctcccat cagtggacaa
961 attagatgtt catcaaatat tacagggctg ctattaacaa gagatggtgg taataccaac
1021 aatgagtccg agatcttcag acctggagga g
//