LOCUS HIV1U16056 1051 bp mRNA linear VRL 30-JAN-1996
DEFINITION Human immunodeficiency virus type 1 clone XSH141R4D envelope
glycoprotein (env) mRNA, V1-V5 regions, partial cds.
ACCESSION U16056
VERSION U16056.1
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE 1 (bases 1 to 1051)
AUTHORS Shapshak,P., Nagano,I., Xin,K., Bradley,W., McCoy,C.B., Sun,N.C.J.,
Stewart,R.V., Yoshioka,M., Petito,C., Goodkin,K., Douyon,R.,
Srivastava,A.K. and Crandall,K.A.
TITLE HIV-1 heterogeneity and cytokines. Neuropathogenesis
JOURNAL Adv. Exp. Med. Biol. 373, 225-238 (1995)
PUBMED 7668155
REFERENCE 2 (bases 1 to 1051)
AUTHORS Xin,K.-Q., Shapshak,P., Nagano,I., Stewart,R.V., Srivastava,A.K.,
Wood,C., Morikawa,S., Ushijima,H. and Okuda,K.
TITLE Heteogeneity of V1-V5 regions of the HIV-1 envelope gene from
brain, cerebrospinal fluid, and blood from patients with AIDS
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1051)
AUTHORS Xin,K.-Q.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-1994) Ke-Qin Xin, Department of Psychiatry,
University of Miami, School of Medicine, 1800 N.W. 10th Avenue,
Elliott Building 2007, Miami, FL 33136, USA
FEATURES Location/Qualifiers
source 1..1051
/organism="Human immunodeficiency virus 1"
/mol_type="mRNA"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="XSH141R4D"
/tissue_type="brain"
gene 1..1051
/gene="env"
CDS <1..>1051
/gene="env"
/note="Caveat: please note that this sequence has been
determined to be similar to HIV-1/IIIB, GenBank Accession
Number K03455. Additional studies are being done to
investigate this."
/codon_start=1
/product="envelope glycoprotein"
/protein_id="AAA86062.1"
/translation="TPLCVSLKCTDLENDTNTNSSSGRMIMEKGEIKNCSFNISTSIR
GKVQKEYAFSYKLDIIPIDNDTTSYSLASRNTSAITQACPKVSFEPIPIHYCAPAGFA
ILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAK
TIIVQLNTSVEINCPRPTNNTRKRIRIQRGPGRAFVTIGKIGNMSQAHCNISRAKWNN
TLKQIATKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNS
TWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYPPPISGQIRCSSNITGLLLTR
DGGNTNNESEIFRPGG"
BASE COUNT 396 a 189 c 208 g 258 t
ORIGIN
1 accccactct gtgttagttt aaagtgcact gatttggaga atgatactaa taccaatagt
61 agtagcggga gaatgataat ggagaaagga gagataaaaa actgctcttt caatatcagc
121 acaagcataa gaggtaaggt gcagaaagaa tatgcatttt cttataaact tgatattata
181 ccaatagata atgatactac cagctattcg ttggcaagtc ggaacacctc agccattaca
241 caggcctgtc caaaggtatc ctttgagcca attcccatac attattgtgc cccggctggt
301 tttgcgattc taaaatgtaa taataagacg ttcaatggaa caggaccatg tacaaatgtc
361 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaat
421 ggcagtctag cagaagaaga ggtagtaatt agatctgtca atttcacgga caatgctaaa
481 accataatag tacagctgaa cacatctgta gaaattaatt gtccaagacc caccaacaat
541 acaagaaaaa gaatccgtat ccagagagga ccagggagag catttgttac aataggaaaa
601 ataggaaata tgagccaagc acattgtaac attagtagag caaaatggaa taacacttta
661 aaacagatag ctaccaaatt aagagaacaa tttggaaata ataaaacaat aatctttaag
721 caatcctcag gaggggaccc agaaattgta acgcacagtt ttaattgtgg aggggaattt
781 ttctactgta attcaacaca actgtttaat agtacttggt ttaatagtac ttggagtact
841 gaagggtcaa ataacactga aggaagtgac acaatcaccc tcccatgcag aataaaacaa
901 attataaaca tgtggcagaa agtaggaaaa gcaatgtatc cccctcccat cagtggacaa
961 attagatgtt catcaaatat tacaggcctg ctattaacaa gagatggtgg taataccaac
1021 aatgagtccg agatcttcag acctggagga g
//