LOCUS       MT066157                 290 bp    RNA     linear   VRL 06-APR-2020
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate
            SARS-CoV-2/human/MYS/CL5045/2020 orf1ab polyprotein, RdRp region,
            (orf1ab) gene, partial cds.
ACCESSION   MT066157
VERSION     MT066157.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Yu Kie,C., Norazimah,T., Rehan Shuhada,A.B., Selvanesan,S.,
            Noorliza,M.N. and Hani,M.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2020) Disease, Natonal Public Health Laboratory,
            Lot 1853, Kg Melayu Sungai Buloh, Sungai Buloh, Selangor 47000,
            Malaysia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="SARS-CoV-2/human/MYS/CL5045/2020"
                     /isolation_source="nasopharyngeal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="Malaysia"
                     /collection_date="24-Jan-2020"
     gene            <1..>290
                     /gene="orf1ab"
     CDS             <1..>290
                     /gene="orf1ab"
                     /codon_start=2
                     /product="orf1ab polyprotein"
                     /protein_id="QIA98592.1"
                     /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF
                     ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI"
     mat_peptide     <1..>290
                     /gene="orf1ab"
                     /product="RdRp"
BASE COUNT           79 a           55 c           57 g           99 t
ORIGIN      
        1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat
       61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg
      121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac
      181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg
      241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg
//