LOCUS MT066157 290 bp RNA linear VRL 06-APR-2020 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/MYS/CL5045/2020 orf1ab polyprotein, RdRp region, (orf1ab) gene, partial cds. ACCESSION MT066157 VERSION MT066157.1 KEYWORDS . SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ORGANISM Severe acute respiratory syndrome coronavirus 2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus. REFERENCE 1 (bases 1 to 290) AUTHORS Yu Kie,C., Norazimah,T., Rehan Shuhada,A.B., Selvanesan,S., Noorliza,M.N. and Hani,M.H. TITLE Direct Submission JOURNAL Submitted (14-FEB-2020) Disease, Natonal Public Health Laboratory, Lot 1853, Kg Melayu Sungai Buloh, Sungai Buloh, Selangor 47000, Malaysia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..290 /organism="Severe acute respiratory syndrome coronavirus 2" /mol_type="genomic RNA" /isolate="SARS-CoV-2/human/MYS/CL5045/2020" /isolation_source="nasopharyngeal swab" /host="Homo sapiens" /db_xref="taxon:2697049" /country="Malaysia" /collection_date="24-Jan-2020" gene <1..>290 /gene="orf1ab" CDS <1..>290 /gene="orf1ab" /codon_start=2 /product="orf1ab polyprotein" /protein_id="QIA98592.1" /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI" mat_peptide <1..>290 /gene="orf1ab" /product="RdRp" BASE COUNT 79 a 55 c 57 g 99 t ORIGIN 1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat 61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg 121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac 181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg 241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg //