LOCUS       MT050417                 562 bp    RNA     linear   VRL 06-APR-2020
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate
            SARS-CoV-2/human/AUS/QLD05/2020_FSS918 ORF1ab polyprotein, RdRp
            region, gene, partial cds.
ACCESSION   MT050417
VERSION     MT050417.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Northill,J.A., Huang,B., Pyke,A., De Jong,A., van den Hurk,A.,
            Taylor,C., Warrilow,D., Genge,D., Gamez,E., Hewitson,G., Mackay,I.,
            Sultana,I., McMahon,J., Barcelon,J., Finger,M., Simpson,N.,
            Nair,N., Burtonclay,P., Moore,P., Wheatley,S., Moody,S.,
            Hall-Mendelin,S., Gardam,T. and Moore,F.
  TITLE     Betacoronavirus in Queensland, Australia, 2020
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Northill,J.A., Huang,B., Pyke,A., De Jong,A., van den Hurk,A.,
            Taylor,C., Warrilow,D., Genge,D., Gamez,E., Hewitson,G., Mackay,I.,
            Sultana,I., McMahon,J., Barcelon,J., Finger,M., Simpson,N.,
            Nair,N., Burtonclay,P., Moore,P., Wheatley,S., Moody,S.,
            Hall-Mendelin,S., Gardam,T. and Moore,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2020) Public Health Virology, Queensland Health
            Forensic and Scientific Services, 39 Kessels Road, Coopers Plains,
            Queensland 4108, Australia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="SARS-CoV-2/human/AUS/QLD05/2020_FSS918"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="Australia"
                     /collection_date="Feb-2020"
     CDS             <1..>562
                     /codon_start=2
                     /product="ORF1ab polyprotein"
                     /protein_id="QIA20057.1"
                     /translation="DRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEM
                     VMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ
                     HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF
                     KSVLYYQNNVFMSEAKCWTETDLTKGP"
     mat_peptide     <1..>562
                     /product="RdRp"
BASE COUNT          163 a          102 c          112 g          185 t
ORIGIN      
        1 tgatagagcc atgcctaaca tgcttagaat tatggcctca cttgttcttg ctcgcaaaca
       61 tacaacgtgt tgtagcttgt cacaccgttt ctatagatta gctaatgagt gtgctcaagt
      121 attgagtgaa atggtcatgt gtggcggttc actatatgtt aaaccaggtg gaacctcatc
      181 aggagatgcc acaactgctt atgctaatag tgtttttaac atttgtcaag ctgtcacggc
      241 caatgttaat gcacttttat ctactgatgg taacaaaatt gccgataagt atgtccgcaa
      301 tttacaacac agactttatg agtgtctcta tagaaataga gatgttgaca cagactttgt
      361 gaatgagttt tacgcatatt tgcgtaaaca tttctcaatg atgatactct ctgacgatgc
      421 tgttgtgtgt ttcaatagca cttatgcatc tcaaggtcta gtggctagca taaagaactt
      481 taagtcagtt ctttattatc aaaacaatgt ttttatgtct gaagcaaaat gttggactga
      541 gactgacctt actaaaggac ct
//