LOCUS MT050417 562 bp RNA linear VRL 06-APR-2020 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/QLD05/2020_FSS918 ORF1ab polyprotein, RdRp region, gene, partial cds. ACCESSION MT050417 VERSION MT050417.1 KEYWORDS . SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ORGANISM Severe acute respiratory syndrome coronavirus 2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus. REFERENCE 1 (bases 1 to 562) AUTHORS Northill,J.A., Huang,B., Pyke,A., De Jong,A., van den Hurk,A., Taylor,C., Warrilow,D., Genge,D., Gamez,E., Hewitson,G., Mackay,I., Sultana,I., McMahon,J., Barcelon,J., Finger,M., Simpson,N., Nair,N., Burtonclay,P., Moore,P., Wheatley,S., Moody,S., Hall-Mendelin,S., Gardam,T. and Moore,F. TITLE Betacoronavirus in Queensland, Australia, 2020 JOURNAL Unpublished REFERENCE 2 (bases 1 to 562) AUTHORS Northill,J.A., Huang,B., Pyke,A., De Jong,A., van den Hurk,A., Taylor,C., Warrilow,D., Genge,D., Gamez,E., Hewitson,G., Mackay,I., Sultana,I., McMahon,J., Barcelon,J., Finger,M., Simpson,N., Nair,N., Burtonclay,P., Moore,P., Wheatley,S., Moody,S., Hall-Mendelin,S., Gardam,T. and Moore,F. TITLE Direct Submission JOURNAL Submitted (11-FEB-2020) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, Queensland 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..562 /organism="Severe acute respiratory syndrome coronavirus 2" /mol_type="genomic RNA" /isolate="SARS-CoV-2/human/AUS/QLD05/2020_FSS918" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:2697049" /country="Australia" /collection_date="Feb-2020" CDS <1..>562 /codon_start=2 /product="ORF1ab polyprotein" /protein_id="QIA20057.1" /translation="DRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEM VMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF KSVLYYQNNVFMSEAKCWTETDLTKGP" mat_peptide <1..>562 /product="RdRp" BASE COUNT 163 a 102 c 112 g 185 t ORIGIN 1 tgatagagcc atgcctaaca tgcttagaat tatggcctca cttgttcttg ctcgcaaaca 61 tacaacgtgt tgtagcttgt cacaccgttt ctatagatta gctaatgagt gtgctcaagt 121 attgagtgaa atggtcatgt gtggcggttc actatatgtt aaaccaggtg gaacctcatc 181 aggagatgcc acaactgctt atgctaatag tgtttttaac atttgtcaag ctgtcacggc 241 caatgttaat gcacttttat ctactgatgg taacaaaatt gccgataagt atgtccgcaa 301 tttacaacac agactttatg agtgtctcta tagaaataga gatgttgaca cagactttgt 361 gaatgagttt tacgcatatt tgcgtaaaca tttctcaatg atgatactct ctgacgatgc 421 tgttgtgtgt ttcaatagca cttatgcatc tcaaggtcta gtggctagca taaagaactt 481 taagtcagtt ctttattatc aaaacaatgt ttttatgtct gaagcaaaat gttggactga 541 gactgacctt actaaaggac ct //