LOCUS MN970004 290 bp RNA linear VRL 11-FEB-2020 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SI200121-SP orf1ab polyprotein, RdRP region, (orf1ab) gene, partial cds. ACCESSION MN970004 VERSION MN970004.1 KEYWORDS . SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ORGANISM Severe acute respiratory syndrome coronavirus 2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus. REFERENCE 1 (bases 1 to 290) AUTHORS Buathong,R., Wacharapluesadee,S., Lamsirithawon,S., Chaifoo,W., Ponpinit,T., Joyjinda,Y., Ruchisrisarod,C., Rodpan,A., Sirivichatakul,S., Vachiraphan,A., Plipat,T. and Hemachudha,T. TITLE Direct Submission JOURNAL Submitted (19-JAN-2020) Faculty of Medicine, Chulalongkorn University, Rama IV Rd, Bangkok 10330, Thailand COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..290 /organism="Severe acute respiratory syndrome coronavirus 2" /mol_type="genomic RNA" /isolate="SI200121-SP" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:2697049" /country="Thailand" /collection_date="13-Jan-2020" gene <1..>290 /gene="orf1ab" CDS <1..>290 /gene="orf1ab" /note="pp1ab" /codon_start=2 /product="orf1ab polyprotein" /protein_id="QHN69983.1" /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI" mat_peptide <1..>290 /gene="orf1ab" /product="RdRP" BASE COUNT 79 a 55 c 57 g 99 t ORIGIN 1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat 61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg 121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac 181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg 241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg //