LOCUS       MN970004                 290 bp    RNA     linear   VRL 11-FEB-2020
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate SI200121-SP
            orf1ab polyprotein, RdRP region, (orf1ab) gene, partial cds.
ACCESSION   MN970004
VERSION     MN970004.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Buathong,R., Wacharapluesadee,S., Lamsirithawon,S., Chaifoo,W.,
            Ponpinit,T., Joyjinda,Y., Ruchisrisarod,C., Rodpan,A.,
            Sirivichatakul,S., Vachiraphan,A., Plipat,T. and Hemachudha,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2020) Faculty of Medicine, Chulalongkorn
            University, Rama IV Rd, Bangkok 10330, Thailand
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="SI200121-SP"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="Thailand"
                     /collection_date="13-Jan-2020"
     gene            <1..>290
                     /gene="orf1ab"
     CDS             <1..>290
                     /gene="orf1ab"
                     /note="pp1ab"
                     /codon_start=2
                     /product="orf1ab polyprotein"
                     /protein_id="QHN69983.1"
                     /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF
                     ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI"
     mat_peptide     <1..>290
                     /gene="orf1ab"
                     /product="RdRP"
BASE COUNT           79 a           55 c           57 g           99 t
ORIGIN      
        1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat
       61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg
      121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac
      181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg
      241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg
//