LOCUS MN938386 287 bp RNA linear VRL 11-FEB-2020 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-004_2020 ORF1ab polyprotein, RdRp region, (orf1ab) gene, partial cds. ACCESSION MN938386 VERSION MN938386.1 KEYWORDS . SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ORGANISM Severe acute respiratory syndrome coronavirus 2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus. REFERENCE 1 (bases 1 to 287) AUTHORS Chan,J.F.-W., Yuan,S., Kok,K.H., To,K.K.-W., Chu,H., Yang,J., Xing,F., Liu,J., Yip,C.C.-Y., Poon,R.W.-S., Tsai,H.W., Lo,S.K.-F., Chan,K.H., Poon,V.K.-M., Chan,W.M., Ip,J.D., Cai,J.P., Cheng,V.C.-C., Chen,H., Hui,C.K.-M. and Yuen,K.Y. TITLE A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster JOURNAL Lancet (2020) In press REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 287) AUTHORS Chan,J.F.W. and Yuen,K.-Y. TITLE Direct Submission JOURNAL Submitted (14-JAN-2020) University of Hong Kong-Shenzhen Hospital, 1 Haiyuan 1st Road, Futian District, Shenzhen, Guangdong, P.R.C. COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..287 /organism="Severe acute respiratory syndrome coronavirus 2" /mol_type="genomic RNA" /isolate="2019-nCoV_HKU-SZ-004_2020" /isolation_source="nasopharyngeal swab" /host="Homo sapiens" /db_xref="taxon:2697049" /country="China: Shenzhen" /collection_date="Jan-2020" gene <1..>287 /gene="orf1ab" CDS <1..>287 /gene="orf1ab" /note="pp1ab" /codon_start=3 /product="ORF1ab polyprotein" /protein_id="QHN73804.1" /translation="SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL" mat_peptide <1..>287 /gene="orf1ab" /product="RdRp" BASE COUNT 98 a 54 c 53 g 82 t ORIGIN 1 tgagttatga ggatcaagat gcacttttcg catatacaaa acgtaatgtc atccctacta 61 taactcaaat gaatcttaag tatgccatta gtgcaaagaa tagagctcgc accgtagctg 121 gtgtctctat ctgtagtact atgaccaata gacagtttca tcaaaaatta ttgaaatcaa 181 tagccgccac tagaggagct actgtagtaa ttggaacaag caaattctat ggtggttggc 241 acaacatgtt aaaaactgtt tatagtgatg tagaaaaccc tcacctt //