LOCUS       MN938386                 287 bp    RNA     linear   VRL 11-FEB-2020
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate
            2019-nCoV_HKU-SZ-004_2020 ORF1ab polyprotein, RdRp region, (orf1ab)
            gene, partial cds.
ACCESSION   MN938386
VERSION     MN938386.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Chan,J.F.-W., Yuan,S., Kok,K.H., To,K.K.-W., Chu,H., Yang,J.,
            Xing,F., Liu,J., Yip,C.C.-Y., Poon,R.W.-S., Tsai,H.W., Lo,S.K.-F.,
            Chan,K.H., Poon,V.K.-M., Chan,W.M., Ip,J.D., Cai,J.P.,
            Cheng,V.C.-C., Chen,H., Hui,C.K.-M. and Yuen,K.Y.
  TITLE     A familial cluster of pneumonia associated with the 2019 novel
            coronavirus indicating person-to-person transmission: a study of a
            family cluster
  JOURNAL   Lancet (2020) In press
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 287)
  AUTHORS   Chan,J.F.W. and Yuen,K.-Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) University of Hong Kong-Shenzhen Hospital,
            1 Haiyuan 1st Road, Futian District, Shenzhen, Guangdong, P.R.C.
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="2019-nCoV_HKU-SZ-004_2020"
                     /isolation_source="nasopharyngeal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="China: Shenzhen"
                     /collection_date="Jan-2020"
     gene            <1..>287
                     /gene="orf1ab"
     CDS             <1..>287
                     /gene="orf1ab"
                     /note="pp1ab"
                     /codon_start=3
                     /product="ORF1ab polyprotein"
                     /protein_id="QHN73804.1"
                     /translation="SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC
                     STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL"
     mat_peptide     <1..>287
                     /gene="orf1ab"
                     /product="RdRp"
BASE COUNT           98 a           54 c           53 g           82 t
ORIGIN      
        1 tgagttatga ggatcaagat gcacttttcg catatacaaa acgtaatgtc atccctacta
       61 taactcaaat gaatcttaag tatgccatta gtgcaaagaa tagagctcgc accgtagctg
      121 gtgtctctat ctgtagtact atgaccaata gacagtttca tcaaaaatta ttgaaatcaa
      181 tagccgccac tagaggagct actgtagtaa ttggaacaag caaattctat ggtggttggc
      241 acaacatgtt aaaaactgtt tatagtgatg tagaaaaccc tcacctt
//