LOCUS MH499239 2274 bp cRNA linear VRL 09-AUG-2018
DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete
cds.
ACCESSION MH499239
VERSION MH499239.1
DBLINK BioProject: PRJNA309181
KEYWORDS .
SOURCE Influenza A virus
ORGANISM Influenza A virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2274)
AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
CONSRTM Centers of Excellence for Influenza Research and Surveillance
(CEIRS)
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT This submission was made by the CEIRS Data Processing and
Coordinating Center (DPCC) on behalf of the St. Jude Center of
Excellence for Influenza Research and Surveillance (CEIRS). This
work was supported by National Institute of Allergy and Infectious
Diseases, National Institutes of Health, grant HHSN272201400006C.
##Assembly-Data-START##
Assembly Method :: IRMA v. 0.6.7
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2274
/organism="Influenza A virus"
/mol_type="viral cRNA"
/strain="A/environment/Chile/C20141/2016"
/serotype="H13N9"
/isolation_source="feces"
/db_xref="taxon:11320"
/segment="2"
/country="Chile"
/collection_date="13-Dec-2016"
gene 1..2274
/gene="PB1"
CDS 1..2274
/gene="PB1"
/codon_start=1
/product="polymerase PB1"
/protein_id="AXF49386.1"
/translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSEKGKWTTNSETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGI
FENSCIETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANES
GRLIDFLKDVMDSMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRSYL
IRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGN
EKKAKLANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFR
NVLSIAPIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLENIDLKYFNESTKKKIEKI
RPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALI
VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSME
LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDT
QIQTRRSFELKKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRL
CNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGI
LEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEF
AEIMKICSTIEELRRQK"
gene 95..367
/gene="PB1-F2"
CDS 95..367
/gene="PB1-F2"
/codon_start=1
/product="PB1-F2 protein"
/protein_id="AXF49387.1"
/translation="MEQGQDIPWTRLTEHINIQKKGNGQQTQKLEHLNSIQLMGHCLR
TMNQVDMHKRTVSLKQWLSLKSPTQESLKTHVLKRWKLFNKQEWTN"
BASE COUNT 798 a 455 c 528 g 493 t
ORIGIN
1 atggatgtca atccgacttt acttttcttg aaagttccag cgcaaaatgc cataagcacc
61 acattcccgt atactggaga ccctccatac agccatggaa cagggacagg atataccatg
121 gacacggtta acagaacaca tcaatattca gaaaaaggga aatggacaac aaactcagaa
181 actggagcac ctcaactcaa tccaattgat gggccattgc ctgaggacaa tgaaccaagt
241 ggatatgcac aaacggactg tgtccttgaa gcaatggctt tccttgaaga gtcccaccca
301 ggaatctttg aaaactcatg tattgaaacg atggaagttg ttcaacaaac aagagtggac
361 aaattgaccc aaggccgtca gacctatgat tggacattaa acaggaatca gccggctgca
421 actgcattag ctaatactat agaggtcttc agatcgaacg gtcttacagc taatgaatca
481 ggaaggctaa tagattttct caaggatgtg atggactcaa tggataagga ggaaatggaa
541 ataacaacgc atttccaaag gaaaagaagg gtgagagaca acatgaccaa gaagatggta
601 acacaaagga caatagggaa gaagaaacag aggctaaaca aaaggagcta tctaataaga
661 gctttgacac tgaacacaat gacaaaagac gccgaaaggg gcaaattaaa gagaagggca
721 attgcaacac ccggaatgca aataaggggg tttgtgtact ttgttgaaac attagcaagg
781 agcatttgtg agaagcttga acaatctgga ctcccagttg gaggcaatga aaagaaggct
841 aaactggcaa atgttgtgag aaaaatgatg actaattcgc aagacacaga gctctctttc
901 acaatcactg gagacaacac caaatggaat gagaatcaga accctaggat gtttctggca
961 atgataacat atataacaag gaaccaacct gaatggttca ggaatgtctt gagcattgca
1021 cctataatgt tctcaaataa aatggcaaga ctaggaaaag gatacatgtt cgaaagtaag
1081 agcatgaagc ttcgaacaca aataccggca gaaatgctag aaaacattga tctgaagtac
1141 ttcaatgagt caacaaaaaa gaaaatagag aagataagac ctcttttaat agatggcaca
1201 gcctcattaa gccctggaat gatgatgggc atgttcaaca tgctgagtac tgttttggga
1261 gtttcgattc taaatctagg gcaaaagagg tacaccaaaa caacatactg gtgggacgga
1321 ctccaatcct ctgatgactt tgctctcata gtgaatgctc cgaatcatga gggaatacaa
1381 gcaggagtag acagattcta cagaacttgc aagctggtcg gaatcaacat gagcaaaaag
1441 aagtcctaca taaacaggac aggaacattt gaattcacaa gttttttcta ccgctatgga
1501 tttgtagcca acttcagcat ggagttaccc agctttggag tgtccgggat caacgaatct
1561 gcagacatga gcattggggt aacagtgata aagaacaaca tgatcaacaa tgatcttgga
1621 ccagcaacag cccaaatggc tcttcagcta ttcatcaagg attacagata cacatatcga
1681 tgtcacagag gagacacaca aattcagaca aggaggtcat tcgagctgaa gaagttgtgg
1741 gaacaaaccc gctcaaaagc aggactgctg gtctcagatg gaggaccaaa tctatacaat
1801 atccggaatc ttcacattcc ggaagtctgc ttgaaatggg agctaatgga cgaagactat
1861 cagggaaggc tttgtaaccc cctgaatccg tttgtcagcc acaaagaaat agagtctgtg
1921 aacaatgccg tggtgatgcc agctcacggc ccagccaaga gcatggaata tgatgctgtt
1981 gcaaccactc actcctggat ccctaagagg aaccgctcca ttctcaatac aagccaaagg
2041 ggaatccttg aagacgaaca gatgtatcaa aagtgctgca atctattcga aaaattcttc
2101 cctagcagtt catacaggag gccggttgga atttccagca tggtggaggc catggtttct
2161 agggcccgaa ttgatgcgcg aattgacttc gaatctggac ggattaagaa ggaggagttt
2221 gctgagatca tgaagatctg ttccaccatt gaagagctca gacggcagaa atag
//