LOCUS       MH499090                 838 bp    cRNA    linear   VRL 09-AUG-2018
DEFINITION  Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
            8 nuclear export protein (NEP) and nonstructural protein 1 (NS1)
            genes, complete cds.
ACCESSION   MH499090
VERSION     MH499090.1
DBLINK      BioProject: PRJNA309181
KEYWORDS    .
SOURCE      Influenza A virus
  ORGANISM  Influenza A virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
  CONSRTM   Centers of Excellence for Influenza Research and Surveillance
            (CEIRS)
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
            Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT     This submission was made by the CEIRS Data Processing and
            Coordinating Center (DPCC) on behalf of the St. Jude Center of
            Excellence for Influenza Research and Surveillance (CEIRS). This
            work was supported by National Institute of Allergy and Infectious
            Diseases, National Institutes of Health, grant HHSN272201400006C.
            
            ##Assembly-Data-START##
            Assembly Method       :: IRMA v. 0.6.7
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Influenza A virus"
                     /mol_type="viral cRNA"
                     /strain="A/environment/Chile/C20141/2016"
                     /serotype="H13N9"
                     /isolation_source="feces"
                     /db_xref="taxon:11320"
                     /segment="8"
                     /country="Chile"
                     /collection_date="13-Dec-2016"
     gene            1..838
                     /gene="NEP"
                     /gene_synonym="NS2"
     CDS             join(1..30,503..838)
                     /gene="NEP"
                     /gene_synonym="NS2"
                     /note="nonstructural protein 2"
                     /codon_start=1
                     /product="nuclear export protein"
                     /protein_id="AXF49385.1"
                     /translation="MDSNTVSSFQDIMMRMSKMQLGSSSEDLNGMITQFESLKLYRDS
                     LGEAVMRMGDLHSLQNRNGKWREQLSQKFEEIRWLIEEVRHRLKITENSFEQITFMQA
                     LQLLLEVEQEIRTFSFQLI"
     gene            1..693
                     /gene="NS1"
     CDS             1..693
                     /gene="NS1"
                     /codon_start=1
                     /product="nonstructural protein 1"
                     /protein_id="AXF49384.1"
                     /translation="MDSNTVSSFQVDCFLWHVRKRFADQEMGDAPFLDRLRRDQKSLR
                     GRGSTLGLDIETATRAGKQIVERILEEESDEALKMTIASVPASRYLTDMTLEEMSRDW
                     FMLMPKQKVAGSLCIRMDQAIMDKNIMLKANFSVIFNRLETLILLRAFTEEGAIVGEI
                     SPLPSLPGHNDEDVKNAIGILIGGLEWNDNTVRVSETLQRFAWRSGNEDGRPPLPPKQ
                     KRKMARTVESEV"
BASE COUNT          258 a          171 c          207 g          202 t
ORIGIN      
        1 atggactcca acactgtgtc aagctttcag gtagactgct ttctttggca tgtccgcaaa
       61 cggtttgcag accaagaaat gggtgatgcc ccattccttg accggcttcg ccgagatcag
      121 aagtctctaa ggggaagggg cagcactctt ggtctggaca tcgaaacagc cactcgtgcc
      181 gggaagcaga tagtggagag gattctggag gaggaatctg atgaggcact caaaatgact
      241 attgcttctg tgcctgcttc acgctaccta actgacatga ctcttgaaga gatgtcaagg
      301 gactggttca tgctcatgcc caagcagaaa gtagcaggct ccctctgtat cagaatggac
      361 caggcgatta tggataagaa catcatgctg aaagcaaact tcagtgtgat ctttaatcgg
      421 ctggagacac taatactact cagagctttc actgaagaag gagcaattgt tggcgaaatt
      481 tcaccattgc cttctcttcc aggacataat gatgaggatg tcaaaaatgc aattgggatc
      541 ctcatcggag gacttgaatg gaatgataac acagttcgag tctctgaaac tctacagaga
      601 ttcgcttgga gaagcggtaa tgaggatggg agacctccac tccctccaaa acagaaacgg
      661 aaaatggcga gaacagttga gtcagaagtt tgaagaaata aggtggctga ttgaagaagt
      721 gcgacataga ctaaagatca cagagaatag ttttgaacaa ataacattta tgcaagcctt
      781 acaactacta cttgaagtag agcaagagat aagaactttc tcgtttcagc ttatttaa
//