LOCUS MH499090 838 bp cRNA linear VRL 09-AUG-2018 DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment 8 nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. ACCESSION MH499090 VERSION MH499090.1 DBLINK BioProject: PRJNA309181 KEYWORDS . SOURCE Influenza A virus ORGANISM Influenza A virus Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 838) AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S. CONSRTM Centers of Excellence for Influenza Research and Surveillance (CEIRS) TITLE Direct Submission JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS), Memphis, TN 38105, USA COMMENT This submission was made by the CEIRS Data Processing and Coordinating Center (DPCC) on behalf of the St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS). This work was supported by National Institute of Allergy and Infectious Diseases, National Institutes of Health, grant HHSN272201400006C. ##Assembly-Data-START## Assembly Method :: IRMA v. 0.6.7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..838 /organism="Influenza A virus" /mol_type="viral cRNA" /strain="A/environment/Chile/C20141/2016" /serotype="H13N9" /isolation_source="feces" /db_xref="taxon:11320" /segment="8" /country="Chile" /collection_date="13-Dec-2016" gene 1..838 /gene="NEP" /gene_synonym="NS2" CDS join(1..30,503..838) /gene="NEP" /gene_synonym="NS2" /note="nonstructural protein 2" /codon_start=1 /product="nuclear export protein" /protein_id="AXF49385.1" /translation="MDSNTVSSFQDIMMRMSKMQLGSSSEDLNGMITQFESLKLYRDS LGEAVMRMGDLHSLQNRNGKWREQLSQKFEEIRWLIEEVRHRLKITENSFEQITFMQA LQLLLEVEQEIRTFSFQLI" gene 1..693 /gene="NS1" CDS 1..693 /gene="NS1" /codon_start=1 /product="nonstructural protein 1" /protein_id="AXF49384.1" /translation="MDSNTVSSFQVDCFLWHVRKRFADQEMGDAPFLDRLRRDQKSLR GRGSTLGLDIETATRAGKQIVERILEEESDEALKMTIASVPASRYLTDMTLEEMSRDW FMLMPKQKVAGSLCIRMDQAIMDKNIMLKANFSVIFNRLETLILLRAFTEEGAIVGEI SPLPSLPGHNDEDVKNAIGILIGGLEWNDNTVRVSETLQRFAWRSGNEDGRPPLPPKQ KRKMARTVESEV" BASE COUNT 258 a 171 c 207 g 202 t ORIGIN 1 atggactcca acactgtgtc aagctttcag gtagactgct ttctttggca tgtccgcaaa 61 cggtttgcag accaagaaat gggtgatgcc ccattccttg accggcttcg ccgagatcag 121 aagtctctaa ggggaagggg cagcactctt ggtctggaca tcgaaacagc cactcgtgcc 181 gggaagcaga tagtggagag gattctggag gaggaatctg atgaggcact caaaatgact 241 attgcttctg tgcctgcttc acgctaccta actgacatga ctcttgaaga gatgtcaagg 301 gactggttca tgctcatgcc caagcagaaa gtagcaggct ccctctgtat cagaatggac 361 caggcgatta tggataagaa catcatgctg aaagcaaact tcagtgtgat ctttaatcgg 421 ctggagacac taatactact cagagctttc actgaagaag gagcaattgt tggcgaaatt 481 tcaccattgc cttctcttcc aggacataat gatgaggatg tcaaaaatgc aattgggatc 541 ctcatcggag gacttgaatg gaatgataac acagttcgag tctctgaaac tctacagaga 601 ttcgcttgga gaagcggtaa tgaggatggg agacctccac tccctccaaa acagaaacgg 661 aaaatggcga gaacagttga gtcagaagtt tgaagaaata aggtggctga ttgaagaagt 721 gcgacataga ctaaagatca cagagaatag ttttgaacaa ataacattta tgcaagcctt 781 acaactacta cttgaagtag agcaagagat aagaactttc tcgtttcagc ttatttaa //