LOCUS       MH498995                 982 bp    cRNA    linear   VRL 09-AUG-2018
DEFINITION  Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
            7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete
            cds.
ACCESSION   MH498995
VERSION     MH498995.1
DBLINK      BioProject: PRJNA309181
KEYWORDS    .
SOURCE      Influenza A virus
  ORGANISM  Influenza A virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 982)
  AUTHORS   Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
  CONSRTM   Centers of Excellence for Influenza Research and Surveillance
            (CEIRS)
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
            Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT     This submission was made by the CEIRS Data Processing and
            Coordinating Center (DPCC) on behalf of the St. Jude Center of
            Excellence for Influenza Research and Surveillance (CEIRS). This
            work was supported by National Institute of Allergy and Infectious
            Diseases, National Institutes of Health, grant HHSN272201400006C.
            
            ##Assembly-Data-START##
            Assembly Method       :: IRMA v. 0.6.7
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Influenza A virus"
                     /mol_type="viral cRNA"
                     /strain="A/environment/Chile/C20141/2016"
                     /serotype="H13N9"
                     /isolation_source="feces"
                     /db_xref="taxon:11320"
                     /segment="7"
                     /country="Chile"
                     /collection_date="13-Dec-2016"
     gene            1..982
                     /gene="M2"
     CDS             join(1..26,715..982)
                     /gene="M2"
                     /codon_start=1
                     /product="matrix protein 2"
                     /protein_id="AXF49383.1"
                     /translation="MSLLTEVETPTRNEWECRCSDSSDPLVIAASIIGILHLILWILD
                     RLFFKCIYRRLKYGLKKGPSTEGVPESMREEYRQEQQSAVDVDNGHFVNIELE"
     gene            1..759
                     /gene="M1"
     CDS             1..759
                     /gene="M1"
                     /codon_start=1
                     /product="matrix protein 1"
                     /protein_id="AXF49382.1"
                     /translation="MSLLTEVETYVLSIVPSGPLKAEIAQRLEDVFAGKNTDLEALME
                     WLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYRK
                     LKREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATCEQIADSQHR
                     SHRQMVTTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMEVASQARQMVQAMRT
                     IGTHPSSSAGLKDDLLENLQAYQKRMGVQMQRFK"
BASE COUNT          278 a          212 c          266 g          226 t
ORIGIN      
        1 atgagtcttc taaccgaggt cgaaacgtac gttctctcta tcgtcccgtc aggccccctc
       61 aaagccgaga tcgcacagag acttgaagat gtgtttgcag ggaagaacac cgatcttgag
      121 gcactcatgg aatggctaaa gacaagacca atcctgtcac ctctgactaa ggggatttta
      181 ggatttgtgt tcacgctcac cgtgcccagt gagcgaggac tgcagcgtag acgctttgtt
      241 caaaatgccc ttaatgggaa tggggatcca aacaacatgg acagagcagt caaactgtac
      301 agaaagctga aaagggagat aacattccat ggggcaaaag aagtggcact tagttattcg
      361 actggtgcac ttgccagttg catgggcctc atatacaatc ggatggggac tgtgaccact
      421 gaagtggcat ttggcctagt gtgcgccaca tgtgagcaga tagctgattc ccagcaccgg
      481 tctcacagac aaatggtgac gacaaccaac ccactaatca ggcacgagaa cagaatggtg
      541 ctggccagta ctacagctaa ggccatggag cagatggcag gatcaagtga gcaggcagca
      601 gaggctatgg aagttgctag tcaggccaga cagatggtgc aggcaatgag gaccattggg
      661 actcatccta gctccagtgc tggtctaaaa gatgatcttc ttgaaaattt gcaggcctac
      721 cagaaacgaa tgggagtgca gatgcagcga ttcaagtgat cctcttgtta tagccgcaag
      781 catcattggg atcttgcact tgatattgtg gatacttgat cgtcttttct tcaaatgcat
      841 ttatcgtcgc cttaaatacg gtttgaaaaa agggccttct acggaaggag tgcctgagtc
      901 tatgagggaa gaatatcggc aggaacagca gagtgctgtg gatgttgaca atggtcattt
      961 tgtcaacata gagctggagt aa
//