LOCUS MH498974 1497 bp cRNA linear VRL 09-AUG-2018 DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment 5 nucleocapsid protein (NP) gene, complete cds. ACCESSION MH498974 VERSION MH498974.1 DBLINK BioProject: PRJNA309181 KEYWORDS . SOURCE Influenza A virus ORGANISM Influenza A virus Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 1497) AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S. CONSRTM Centers of Excellence for Influenza Research and Surveillance (CEIRS) TITLE Direct Submission JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS), Memphis, TN 38105, USA COMMENT This submission was made by the CEIRS Data Processing and Coordinating Center (DPCC) on behalf of the St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS). This work was supported by National Institute of Allergy and Infectious Diseases, National Institutes of Health, grant HHSN272201400006C. ##Assembly-Data-START## Assembly Method :: IRMA v. 0.6.7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1497 /organism="Influenza A virus" /mol_type="viral cRNA" /strain="A/environment/Chile/C20141/2016" /serotype="H13N9" /isolation_source="feces" /db_xref="taxon:11320" /segment="5" /country="Chile" /collection_date="13-Dec-2016" gene 1..1497 /gene="NP" CDS 1..1497 /gene="NP" /codon_start=1 /product="nucleocapsid protein" /protein_id="AXF49381.1" /translation="MASQGTKRSYEQMETGGERQNATEIRASVGRMVGGIGRFYVQMC TELKLNDHEGRLIQNSITIERMVLSAFDDRRNKYLEEHPSAGKDPKKTGGPIYKRRDG KWVRELILYDKEEIRRIWRQANNGEDATAGITHLMIWHSNLNDATYQRTRALVRTGMD PRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIA YERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCL PACVYGLAVASGYDFEREGYSLVGIDPFRLLQNSQVFSLIRPNENPAHKSQLVWMACH SAAFEDLRVSSFIRGTKVVPRGQLSTRGVQIASNENMEAMESSTLELRSRYWAIRTRS GGNTNHQRASAGQISVQPTFSVQRNLPFERATIMAAFTGNTEGRTSDMRTEIIRMMEN ARPEDVSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDS" BASE COUNT 479 a 289 c 410 g 319 t ORIGIN 1 atggcgtctc aaggcaccaa acgatcttat gaacagatgg aaactggtgg ggagcgccag 61 aatgccactg aaatcagagc atctgttggg agaatggttg gtggaattgg aaggttctat 121 gtacagatgt gcactgaact caaactcaat gaccatgaag ggaggctgat tcagaacagc 181 ataacaatag agaggatggt tctctcagca tttgatgata ggagaaacaa atatctagaa 241 gagcatccca gtgctggaaa agaccccaag aagactggag ggccaatata caagagaaga 301 gatgggaaat gggtgagaga attgattctg tatgacaaag aagaaatcag aaggatttgg 361 cgtcaggcga acaatggaga agacgcaact gctggtataa cccatttaat gatctggcat 421 tccaatctga atgatgccac atatcagaga acaagggcac ttgtgcgtac tgggatggac 481 cccaggatgt gctctctgat gcaaggatca actctcccga ggaggtctgg ggccgctgga 541 gcagcagtga aaggggttgg aacaatggtg atggaattga ttcggatgat caagcgaggg 601 atcaatgatc ggaacttctg gagaggtgaa aatggacgga ggacaagaat tgcatacgaa 661 agaatgtgca acattctcaa agggaaattc caaacagcag cacaacgagc aatgatggac 721 caagtaagag aaagccggaa tcccgggaat gctgaaattg aagatctcat ctttcttgca 781 cgatctgctc tcattctgag aggatcagtg gctcataagt cctgcttacc agcttgtgtg 841 tatgggcttg cagtggccag tggatacgac tttgagagag aagggtactc tctggtagga 901 attgaccctt tccgtctgct ccaaaacagt caagtcttca gtcttataag accaaatgaa 961 aatccagcac ataaaagtca gctggtatgg atggcatgtc attctgcagc atttgaggat 1021 ctgagagtgt caagcttcat caggggaaca aaagtggtcc caagagggca actttccacc 1081 agaggagtac agattgcttc aaatgagaac atggaagcaa tggaatctag tactcttgaa 1141 ttgagaagca gatactgggc tataaggacc aggagcggag ggaacactaa ccatcagaga 1201 gcgtctgcag gacaaatcag cgtacagcca acattctctg tgcagagaaa cctcccattc 1261 gagagagcaa ccattatggc ggcattcacg ggaaacactg aaggcagaac ctcagacatg 1321 agaactgaga tcataagaat gatggaaaat gccagacctg aagatgtgtc tttccagggg 1381 cggggagtct tcgagctctc tgacgaaaag gcaacgaacc cgatcgtgcc ttcctttgac 1441 atgagtaacg aaggatctta tttctttgga gacaatgcag aggagtatga cagttaa //