LOCUS       MH498974                1497 bp    cRNA    linear   VRL 09-AUG-2018
DEFINITION  Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
            5 nucleocapsid protein (NP) gene, complete cds.
ACCESSION   MH498974
VERSION     MH498974.1
DBLINK      BioProject: PRJNA309181
KEYWORDS    .
SOURCE      Influenza A virus
  ORGANISM  Influenza A virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
  CONSRTM   Centers of Excellence for Influenza Research and Surveillance
            (CEIRS)
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
            Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT     This submission was made by the CEIRS Data Processing and
            Coordinating Center (DPCC) on behalf of the St. Jude Center of
            Excellence for Influenza Research and Surveillance (CEIRS). This
            work was supported by National Institute of Allergy and Infectious
            Diseases, National Institutes of Health, grant HHSN272201400006C.
            
            ##Assembly-Data-START##
            Assembly Method       :: IRMA v. 0.6.7
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Influenza A virus"
                     /mol_type="viral cRNA"
                     /strain="A/environment/Chile/C20141/2016"
                     /serotype="H13N9"
                     /isolation_source="feces"
                     /db_xref="taxon:11320"
                     /segment="5"
                     /country="Chile"
                     /collection_date="13-Dec-2016"
     gene            1..1497
                     /gene="NP"
     CDS             1..1497
                     /gene="NP"
                     /codon_start=1
                     /product="nucleocapsid protein"
                     /protein_id="AXF49381.1"
                     /translation="MASQGTKRSYEQMETGGERQNATEIRASVGRMVGGIGRFYVQMC
                     TELKLNDHEGRLIQNSITIERMVLSAFDDRRNKYLEEHPSAGKDPKKTGGPIYKRRDG
                     KWVRELILYDKEEIRRIWRQANNGEDATAGITHLMIWHSNLNDATYQRTRALVRTGMD
                     PRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIA
                     YERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCL
                     PACVYGLAVASGYDFEREGYSLVGIDPFRLLQNSQVFSLIRPNENPAHKSQLVWMACH
                     SAAFEDLRVSSFIRGTKVVPRGQLSTRGVQIASNENMEAMESSTLELRSRYWAIRTRS
                     GGNTNHQRASAGQISVQPTFSVQRNLPFERATIMAAFTGNTEGRTSDMRTEIIRMMEN
                     ARPEDVSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDS"
BASE COUNT          479 a          289 c          410 g          319 t
ORIGIN      
        1 atggcgtctc aaggcaccaa acgatcttat gaacagatgg aaactggtgg ggagcgccag
       61 aatgccactg aaatcagagc atctgttggg agaatggttg gtggaattgg aaggttctat
      121 gtacagatgt gcactgaact caaactcaat gaccatgaag ggaggctgat tcagaacagc
      181 ataacaatag agaggatggt tctctcagca tttgatgata ggagaaacaa atatctagaa
      241 gagcatccca gtgctggaaa agaccccaag aagactggag ggccaatata caagagaaga
      301 gatgggaaat gggtgagaga attgattctg tatgacaaag aagaaatcag aaggatttgg
      361 cgtcaggcga acaatggaga agacgcaact gctggtataa cccatttaat gatctggcat
      421 tccaatctga atgatgccac atatcagaga acaagggcac ttgtgcgtac tgggatggac
      481 cccaggatgt gctctctgat gcaaggatca actctcccga ggaggtctgg ggccgctgga
      541 gcagcagtga aaggggttgg aacaatggtg atggaattga ttcggatgat caagcgaggg
      601 atcaatgatc ggaacttctg gagaggtgaa aatggacgga ggacaagaat tgcatacgaa
      661 agaatgtgca acattctcaa agggaaattc caaacagcag cacaacgagc aatgatggac
      721 caagtaagag aaagccggaa tcccgggaat gctgaaattg aagatctcat ctttcttgca
      781 cgatctgctc tcattctgag aggatcagtg gctcataagt cctgcttacc agcttgtgtg
      841 tatgggcttg cagtggccag tggatacgac tttgagagag aagggtactc tctggtagga
      901 attgaccctt tccgtctgct ccaaaacagt caagtcttca gtcttataag accaaatgaa
      961 aatccagcac ataaaagtca gctggtatgg atggcatgtc attctgcagc atttgaggat
     1021 ctgagagtgt caagcttcat caggggaaca aaagtggtcc caagagggca actttccacc
     1081 agaggagtac agattgcttc aaatgagaac atggaagcaa tggaatctag tactcttgaa
     1141 ttgagaagca gatactgggc tataaggacc aggagcggag ggaacactaa ccatcagaga
     1201 gcgtctgcag gacaaatcag cgtacagcca acattctctg tgcagagaaa cctcccattc
     1261 gagagagcaa ccattatggc ggcattcacg ggaaacactg aaggcagaac ctcagacatg
     1321 agaactgaga tcataagaat gatggaaaat gccagacctg aagatgtgtc tttccagggg
     1381 cggggagtct tcgagctctc tgacgaaaag gcaacgaacc cgatcgtgcc ttcctttgac
     1441 atgagtaacg aaggatctta tttctttgga gacaatgcag aggagtatga cagttaa
//